Os05g0103000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYC1.
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Os05g0103000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MYC1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.39 | 0.536 | 6.21 | 0.693 | 0.328 | -1.17 | 0.505 | 2.86 | -0.129 | 11.9 | 30.68 | 6223 | -- | -- |
| 130.72 | 0.533 | 6.27 | 0.157 | 0.262 | -0.855 | 0.537 | -- | -0.152 | 11.9 | 29.81 | 6569 | -- | -- |
| 131.46 | 0.534 | 6.21 | 0.716 | 0.328 | -1.17 | -- | 2.88 | -0.123 | 11.6 | 30.6 | 6222 | -- | -- |
| 128.96 | 0.529 | 6.22 | 0.173 | 0.314 | -0.891 | -- | -- | 0.0525 | 11.3 | 31.2 | 7673 | -- | -- |
| 136.46 | 0.544 | 6.2 | 0.733 | -- | -1.18 | -- | 2.64 | -0.0655 | -- | 30.47 | 6585 | -- | -- |
| 162.55 | 0.598 | 6.27 | -0.0852 | 0.336 | -- | 0.644 | -- | -0.149 | 11.3 | -- | -- | -- | -- |
| 164.22 | 0.6 | 6.26 | -0.0606 | 0.338 | -- | -- | -- | -0.147 | 10.8 | -- | -- | -- | -- |
| 133.29 | 0.538 | 6.2 | 0.237 | -- | -0.914 | -- | -- | 0.193 | -- | 31.82 | 8025 | -- | -- |
| 129.76 | 0.531 | 6.22 | -- | 0.301 | -0.867 | -- | -- | 0.0424 | 11.2 | 31.3 | 7729 | -- | -- |
| 171.27 | 0.612 | 6.27 | -0.0675 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 164.31 | 0.6 | 6.26 | -- | 0.338 | -- | -- | -- | -0.141 | 10.8 | -- | -- | -- | -- |
| 133.97 | 0.539 | 6.21 | -- | -- | -0.894 | -- | -- | 0.111 | -- | 31.5 | 8009 | -- | -- |
| 171.39 | 0.611 | 6.27 | -- | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.58 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 16 | 124.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 17 | 124.18 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 20 | 125.01 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 23 | 125.02 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 32 | 125.68 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 33 | 125.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 47 | 126.06 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 102 | 127.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 119 | 128.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 120 | 128.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 121 | 128.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 169 | 129.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 228 | 129.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 231 | 129.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 232 | 129.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 261 | 130.52 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 277 | 130.57 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 289 | 130.77 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 306 | 131.08 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 307 | 131.08 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 311 | 131.10 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 326 | 131.11 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 333 | 131.14 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 394 | 131.24 | atmosphere | 1000 | 43200 | > th | dose independent | sin | 7 | NA |
| 395 | 131.24 | atmosphere | 1000 | 43200 | < th | dose independent | sin | 7 | NA |
| 451 | 131.30 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 4 | 22 |
| 482 | 131.33 | temperature | 25 | 1440 | > th | dose dependent | sin | 9 | NA |
| 492 | 131.34 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 498 | 131.35 | atmosphere | 1000 | 43200 | < th | dose independent | no | NA | NA |
| 535 | 131.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 555 | 131.39 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 615 | 131.44 | atmosphere | 1000 | 43200 | > th | dose independent | no | NA | NA |
| 630 | 131.44 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 634 | 131.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 655 | 131.46 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 656 | 131.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 706 | 131.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 707 | 131.49 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 745 | 131.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 754 | 131.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 802 | 131.55 | atmosphere | 1000 | 43200 | < th | dose independent | sin | 19 | NA |
| 805 | 131.55 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 841 | 131.57 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 868 | 131.59 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 923 | 131.62 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 941 | 131.64 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 991 | 131.67 | atmosphere | 1000 | 43200 | > th | dose independent | sin | 21 | NA |