BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0506700 Os08g0506700|AK100106
(399 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42280.1 | chr2:17611428-17613163 REVERSE LENGTH=360 164 1e-40
AT1G51140.1 | chr1:18943802-18945613 REVERSE LENGTH=380 134 1e-31
AT2G43140.2 | chr2:17931680-17935639 REVERSE LENGTH=310 118 7e-27
AT1G05805.1 | chr1:1744843-1747427 FORWARD LENGTH=363 116 3e-26
AT1G35460.1 | chr1:13040092-13041907 FORWARD LENGTH=260 112 4e-25
AT4G09180.1 | chr4:5847513-5849500 FORWARD LENGTH=263 106 2e-23
AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311 62 4e-10
AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351 62 5e-10
AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298 57 1e-08
AT1G03040.1 | chr1:704279-706457 REVERSE LENGTH=303 55 7e-08
AT4G02590.1 | chr4:1137968-1140306 REVERSE LENGTH=311 55 7e-08
AT4G34530.1 | chr4:16498466-16499946 FORWARD LENGTH=336 52 6e-07
AT5G33210.1 | chr5:12465057-12465713 REVERSE LENGTH=174 50 2e-06
>AT2G42280.1 | chr2:17611428-17613163 REVERSE LENGTH=360
Length = 359
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 134/263 (50%), Gaps = 46/263 (17%)
Query: 144 LLRQSSSPAGFLNHLNMDNGYGSMLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKG 203
LLRQSSSPAG +L+ NGYGSM R
Sbjct: 131 LLRQSSSPAGMFTNLSDQNGYGSM------------RNLMNYEEDEESPSNSNGLRRHCS 178
Query: 204 QLSFSSRQGSLMSQISEMDSEELXXXXXXXXXXXXXXXXXXXXXXYPMSSGWEESSLMSD 263
S ++SQI E+ E +P S W + S D
Sbjct: 179 LSSRPPSSLGMLSQIPEIAPE----------------------TNFPYSH-WNDPSSFID 215
Query: 264 TNISGVKRQRD-------SSEPSQNXXXXXXLAHQFSLPK---TSSEMAAIEKFLQFQDA 313
N+S +KR+ + ++ ++ L+H SLPK T+S+M +++K+LQ QD+
Sbjct: 216 -NLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQLQDS 274
Query: 314 VPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDYIKD 373
VPCKIRAKRGCATHPRSIA KLQELVPNMDKQTNT+DMLDLAVDYIKD
Sbjct: 275 VPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKD 334
Query: 374 LQKQVKGLNDSRANCTCSAKHQQ 396
LQ+Q K LND+RANC C K ++
Sbjct: 335 LQRQYKILNDNRANCKCMNKEKK 357
>AT1G51140.1 | chr1:18943802-18945613 REVERSE LENGTH=380
Length = 379
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Query: 288 LAHQFSLPKTSSEMAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKL 347
LAH SLPK+ S+ IE+ L D++PCKIRAKRGCATHPRSIA KL
Sbjct: 279 LAHHMSLPKSLSD---IEQLLS--DSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKL 333
Query: 348 QELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSA 392
Q+LVPNMD QTNTADMLDLAV YIKDLQ+QVK L +SRA C CS+
Sbjct: 334 QDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRCSS 378
>AT2G43140.2 | chr2:17931680-17935639 REVERSE LENGTH=310
Length = 309
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 288 LAHQFSLPKTSSEMAAIEKFLQF-QDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXK 346
L Q+S+P+T+ EMA +E + +D+VPC+ RAKRG ATHPRSIA K
Sbjct: 200 LETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKK 259
Query: 347 LQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSA 392
LQELVPNMDKQT+ ADMLDLAV++IK LQ QV+ L CTC A
Sbjct: 260 LQELVPNMDKQTSYADMLDLAVEHIKGLQHQVESLEKGMERCTCGA 305
>AT1G05805.1 | chr1:1744843-1747427 FORWARD LENGTH=363
Length = 362
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 288 LAHQFSLPKTSSEMAAIEKFLQF-QDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXK 346
L Q+SLP +S M ++ F+Q +D+VPCKIRAKRGCATHPRSIA K
Sbjct: 253 LFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKK 311
Query: 347 LQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTC 390
LQ+LVPNMDKQT+ +DMLDLAV +IK LQ Q++ L + NCTC
Sbjct: 312 LQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTC 355
>AT1G35460.1 | chr1:13040092-13041907 FORWARD LENGTH=260
Length = 259
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%)
Query: 310 FQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVD 369
F+D+VPC++RAKRGCATHPRSIA +LQELVPNMDKQTNTADML+ AV+
Sbjct: 173 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVE 232
Query: 370 YIKDLQKQVKGLNDSRANCTCSAKHQQ 396
Y+K LQ Q++ L + + C C K +Q
Sbjct: 233 YVKALQSQIQELTEQQKRCKCKPKEEQ 259
>AT4G09180.1 | chr4:5847513-5849500 FORWARD LENGTH=263
Length = 262
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 67/103 (65%)
Query: 294 LPKTSSEMAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPN 353
+P S M+ + +D+V ++RAKRGCATHPRSIA KLQELVPN
Sbjct: 160 VPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPN 219
Query: 354 MDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKHQQ 396
MDKQTNTADML+ AV+Y+K LQ+Q++ L + + CTC K +Q
Sbjct: 220 MDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEEQ 262
>AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311
Length = 310
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 317 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 376
K+RA+RG AT P SIA LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187
Query: 377 QVKGLNDSRANCTCSAKHQ 395
QVK L+ SR SA Q
Sbjct: 188 QVKVLSMSRLGGAASASSQ 206
>AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351
Length = 350
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 316 CKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDYIKDLQ 375
KIRA+RG AT P SIA LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194
Query: 376 KQVKGLNDSRANCTCSAKHQ 395
QVK L+ SR S Q
Sbjct: 195 LQVKVLSMSRLGGAASVSSQ 214
>AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298
Length = 297
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 317 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 376
++RA+RG AT P SIA LQELVPN +K T+ A MLD ++Y++ LQ
Sbjct: 98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156
Query: 377 QVKGLNDSR 385
QVK L+ SR
Sbjct: 157 QVKVLSMSR 165
>AT1G03040.1 | chr1:704279-706457 REVERSE LENGTH=303
Length = 302
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 311 QDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDY 370
Q + ++RA+RG AT P SIA LQELVP ++K T+ A M+D VDY
Sbjct: 137 QSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDRAAMIDEIVDY 195
Query: 371 IKDLQKQVKGLNDSR 385
+K L+ QVK L+ SR
Sbjct: 196 VKFLRLQVKVLSMSR 210
>AT4G02590.1 | chr4:1137968-1140306 REVERSE LENGTH=311
Length = 310
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 317 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 376
++RA+RG AT P SIA LQELVP ++K T+ A M+D VDY+K L+
Sbjct: 145 RVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDYVKFLRL 203
Query: 377 QVKGLNDSR 385
QVK L+ SR
Sbjct: 204 QVKVLSMSR 212
>AT4G34530.1 | chr4:16498466-16499946 FORWARD LENGTH=336
Length = 335
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 298 SSEMAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQ 357
S++ + + K L+ D + +RA+RG AT SIA LQ+LVP DK
Sbjct: 154 SNDSSKVTKELEKTDYI--HVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKI 211
Query: 358 TNTADMLDLAVDYIKDLQKQVKGL 381
T A MLD ++Y++ LQ+Q++ L
Sbjct: 212 TGKAGMLDEIINYVQSLQRQIEFL 235
>AT5G33210.1 | chr5:12465057-12465713 REVERSE LENGTH=174
Length = 173
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 23/23 (100%)
Query: 310 FQDAVPCKIRAKRGCATHPRSIA 332
F+D+VPC++RAKRGCATHPRSIA
Sbjct: 9 FEDSVPCRVRAKRGCATHPRSIA 31
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,291,923
Number of extensions: 131034
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 13
Length of query: 399
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,337,553
Effective search space: 2484590794
Effective search space used: 2484590794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)