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Os03g0782500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0368) R2 : 0.857
β1 : -1.93 (0.134) R2dD : 0.0669 R2D : 0.0703
β2 : 3.59 (0.0929) R2dC : 0.481 R2C : 0.56
β3 : -2.35 (0.0889) R2dE : 0.224 R2E : 0.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00333 (0.0785) R2dN8 : -3.99e-07 R2N8 : -0.00344
σ : 0.687
deviance : 217.46
__
_____
C
peak time of C : 8.55
E
wheather : radiation
threshold : 0.18
memory length : 106
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.83 0.672 10.4 -1.92 3.59 -2.34 -0.735 -2 0.00253 8.53 0.2496 101 1.92 --
217.4 0.687 10.4 -1.92 3.6 -2.37 -0.215 -- -0.00152 8.53 0.24 102 1.84 --
206.21 0.669 10.4 -1.95 3.65 -2.38 -- -1.88 0.00601 8.54 0.1795 104 1.67 --
217.46 0.687 10.4 -1.93 3.59 -2.35 -- -- -0.00333 8.55 0.18 106 1.9 --
321.4 0.84 10.5 -1.93 -- -4.01 -- -0.615 0.0852 -- 47.58 9 7.47 --
289.09 0.797 10.3 -1.93 4.27 -- 0.553 -- 0.137 10.6 -- -- -- --
290.34 0.798 10.3 -1.91 4.26 -- -- -- 0.139 10.5 -- -- -- --
291.25 0.798 10.4 -1.91 -- -4.22 -- -- 0.136 -- 992.7 3 7.49 --
316.46 0.829 10.3 -- 3.56 -2.51 -- -- 0.149 8.34 0.4318 118 2.32 --
1407.57 1.75 10.4 -1.98 -- -- -- -- 0.12 -- -- -- -- --
386.31 0.919 10.3 -- 4.28 -- -- -- 0.351 10.6 -- -- -- --
387.12 0.916 10.4 -- -- -4.24 -- -- 0.35 -- 1158 3 7.46 --
1511.45 1.81 10.4 -- -- -- -- -- 0.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.89 humidity 80.0 270 > th dose independent rect. 4 5
2 207.49 temperature 15.0 270 > th dose dependent rect. 4 4
4 209.93 radiation 1.0 90 < th dose dependent sin 8 NA
5 210.28 humidity 60.0 270 > th dose dependent rect. 4 5
18 213.71 temperature 20.0 270 > th dose independent rect. 4 4
25 214.96 temperature 20.0 270 > th dose independent rect. 5 2
28 215.78 radiation 40.0 270 < th dose dependent rect. 4 5
31 216.32 radiation 1.0 90 < th dose dependent rect. 23 7
33 216.48 radiation 1.0 90 < th dose independent rect. 23 7
37 216.80 humidity 70.0 270 > th dose independent rect. 3 8
42 217.30 radiation 1.0 90 < th dose independent sin 9 NA
48 217.87 atmosphere 1015.0 270 < th dose independent rect. 3 20
49 217.96 humidity 80.0 270 > th dose independent rect. 4 10
51 218.02 radiation 20.0 270 < th dose independent rect. 4 5
53 218.18 atmosphere 1015.0 270 < th dose independent rect. 4 18
54 218.29 wind 9.0 270 < th dose dependent rect. 4 5
62 218.69 precipitation 0.1 270 < th dose independent rect. 8 20
63 218.69 precipitation 0.1 270 < th dose dependent rect. 8 20
86 219.89 temperature 15.0 270 > th dose independent rect. 23 4
88 219.92 temperature 15.0 270 > th dose independent rect. 22 6
94 220.04 wind 9.0 270 < th dose independent rect. 3 20
95 220.11 precipitation 0.1 270 < th dose independent rect. 22 6
96 220.11 precipitation 0.1 270 < th dose dependent rect. 22 6
98 220.27 wind 7.0 270 < th dose independent rect. 4 4
100 220.37 precipitation 0.1 270 < th dose independent rect. 23 4
101 220.37 precipitation 0.1 270 < th dose dependent rect. 23 4
103 220.41 temperature 10.0 270 > th dose independent rect. 4 4
105 220.41 temperature 30.0 270 < th dose independent rect. 4 4
108 220.41 atmosphere 995.0 270 > th dose independent rect. 4 4
109 220.41 atmosphere 1015.0 270 < th dose independent rect. 4 4
110 220.41 temperature 10.0 270 > th dose independent rect. 8 20
113 220.64 temperature 30.0 270 < th dose independent rect. 23 4
114 220.64 humidity 50.0 270 > th dose independent rect. 23 4
117 220.64 atmosphere 995.0 270 > th dose independent rect. 23 4
118 220.64 radiation 1.0 270 < th dose independent rect. 23 4
123 220.64 temperature 10.0 270 > th dose independent rect. 3 20
124 220.64 radiation 1.0 270 < th dose dependent rect. 23 4
130 220.66 wind 9.0 270 < th dose independent rect. 23 4
131 220.66 wind 9.0 270 < th dose independent rect. 4 18
135 220.75 humidity 50.0 10 > th dose dependent rect. 6 6
140 220.95 precipitation 0.1 270 < th dose independent rect. 4 4
141 220.95 precipitation 0.1 270 < th dose dependent rect. 4 4
152 221.15 temperature 30.0 270 < th dose independent rect. 22 6
153 221.15 humidity 50.0 270 > th dose independent rect. 22 6
156 221.15 atmosphere 995.0 270 > th dose independent rect. 22 6
162 221.15 temperature 10.0 270 > th dose independent rect. 4 18
168 221.16 atmosphere 1015.0 90 < th dose dependent rect. 5 6
169 221.18 wind 9.0 270 < th dose independent rect. 22 6
183 221.42 wind 5.0 270 < th dose dependent rect. 5 2
185 221.73 temperature 10.0 90 > th dose dependent rect. 5 20
200 222.34 radiation 40.0 90 < th dose dependent rect. 5 20
233 222.70 temperature 20.0 90 > th dose independent rect. 5 18
237 222.78 temperature 30.0 270 < th dose dependent rect. 23 4
245 223.03 humidity 50.0 90 > th dose dependent rect. 23 6
246 223.09 atmosphere 995.0 270 > th dose independent rect. 8 20
247 223.10 precipitation 0.1 270 < th dose independent rect. 23 14
248 223.10 precipitation 0.1 270 < th dose dependent rect. 23 14
255 223.26 radiation 40.0 270 < th dose independent rect. 13 10
260 223.50 wind 1.0 270 > th dose independent rect. 23 4
261 223.50 radiation 30.0 270 < th dose independent rect. 18 14
262 223.55 radiation 20.0 90 < th dose independent rect. 5 20
266 223.69 wind 9.0 270 < th dose independent rect. 8 20
269 223.75 precipitation 0.1 270 < th dose independent rect. 7 22
270 223.75 precipitation 0.1 270 < th dose dependent rect. 7 22
279 223.88 humidity 50.0 270 > th dose dependent rect. 23 4
282 224.01 wind 9.0 270 < th dose independent rect. 13 10
291 224.13 temperature 10.0 90 > th dose independent rect. 11 18
292 224.16 radiation 1.0 90 > th dose independent sin 9 NA
303 224.29 humidity 70.0 270 > th dose dependent rect. 4 18
311 224.41 precipitation 0.1 90 < th dose independent rect. 11 18
312 224.41 precipitation 0.1 90 < th dose dependent rect. 11 18
358 224.90 radiation 40.0 90 < th dose independent rect. 5 20
360 224.91 temperature 10.0 270 > th dose independent rect. 13 10
361 224.91 temperature 10.0 270 > th dose independent rect. 23 14
362 224.91 atmosphere 995.0 270 > th dose independent rect. 23 14
366 225.02 atmosphere 1015.0 270 < th dose dependent rect. 5 2
375 225.29 atmosphere 1010.0 270 < th dose independent rect. 5 2
408 225.45 wind 3.0 270 < th dose independent rect. 5 2
409 225.45 wind 9.0 270 < th dose independent rect. 23 14
412 225.52 precipitation 0.1 270 < th dose independent rect. 4 18
413 225.52 precipitation 0.1 270 < th dose dependent rect. 4 18
433 225.76 precipitation 0.1 270 < th dose independent rect. 8 10
434 225.76 precipitation 0.1 270 < th dose dependent rect. 8 10
438 225.89 temperature 25.0 90 < th dose independent rect. 1 4
442 225.94 humidity 70.0 270 > th dose independent rect. 18 14
445 226.01 atmosphere 1015.0 270 < th dose independent rect. 23 4
451 226.06 temperature 15.0 10 > th dose dependent rect. 5 5
456 226.15 temperature 10.0 270 > th dose independent rect. 5 2
458 226.15 temperature 30.0 270 < th dose independent rect. 5 2
459 226.15 humidity 50.0 270 > th dose independent rect. 5 2
461 226.15 atmosphere 995.0 270 > th dose independent rect. 5 2
464 226.15 temperature 10.0 270 > th dose independent rect. 7 22
465 226.18 wind 9.0 270 < th dose independent rect. 17 15
482 226.31 radiation 1.0 90 < th dose dependent rect. 1 5
483 226.32 precipitation 0.1 270 < th dose independent rect. 5 2
484 226.32 precipitation 0.1 270 < th dose dependent rect. 5 2
493 226.40 atmosphere 1000.0 90 > th dose independent rect. 11 18
497 226.48 temperature 10.0 270 > th dose independent rect. 8 10
498 226.48 atmosphere 1015.0 270 < th dose independent rect. 8 10
499 226.48 temperature 10.0 270 > th dose independent rect. 18 14
500 226.48 humidity 50.0 270 > th dose independent rect. 18 14
507 226.58 wind 9.0 90 < th dose independent rect. 11 18
514 226.63 wind 1.0 270 > th dose independent rect. 22 6
519 226.71 temperature 30.0 90 < th dose dependent rect. 1 4
526 226.81 temperature 20.0 10 > th dose independent rect. 5 5
529 226.85 atmosphere 995.0 270 > th dose independent rect. 18 14
539 226.93 humidity 80.0 270 > th dose independent rect. 4 17
613 227.94 radiation 1.0 90 < th dose independent rect. 1 5
621 227.97 precipitation 0.1 270 < th dose independent rect. 3 20
623 227.97 precipitation 0.1 270 < th dose dependent rect. 3 20
625 228.04 humidity 80.0 270 > th dose independent rect. 3 20
651 228.34 atmosphere 1015.0 90 < th dose dependent rect. 5 18
663 228.63 humidity 50.0 10 > th dose independent rect. 5 7
671 228.75 atmosphere 995.0 270 > th dose independent rect. 8 9
677 228.78 precipitation 0.1 90 < th dose independent rect. 1 4
678 228.78 precipitation 0.1 90 < th dose dependent rect. 1 4
749 229.37 wind 9.0 270 < th dose independent rect. 8 9
750 229.40 wind 9.0 90 < th dose independent rect. 1 4
751 229.40 temperature 10.0 90 > th dose independent rect. 1 4
754 229.40 humidity 50.0 90 > th dose independent rect. 1 4
757 229.40 atmosphere 995.0 90 > th dose independent rect. 1 4
758 229.40 atmosphere 1010.0 90 < th dose independent rect. 1 4
772 229.49 temperature 30.0 270 < th dose independent rect. 18 14
774 229.53 wind 9.0 90 < th dose dependent rect. 23 6
793 229.81 radiation 40.0 270 < th dose dependent rect. 17 15
797 229.89 atmosphere 1015.0 270 < th dose independent rect. 13 10
801 229.93 temperature 30.0 10 < th dose dependent rect. 24 6
802 229.94 radiation 10.0 10 < th dose dependent rect. 24 6
805 229.98 temperature 25.0 10 < th dose independent rect. 24 6
864 230.54 atmosphere 1015.0 90 < th dose dependent rect. 5 20
898 230.76 atmosphere 995.0 90 > th dose independent rect. 5 18
904 230.80 humidity 50.0 90 > th dose dependent rect. 1 4
905 230.80 humidity 50.0 10 > th dose dependent rect. 6 4
917 230.96 precipitation 0.1 270 < th dose independent rect. 17 15
919 230.96 precipitation 0.1 270 < th dose dependent rect. 17 15
921 230.99 radiation 1.0 270 > th dose independent rect. 8 9
925 231.02 radiation 1.0 90 > th dose independent rect. 18 15
933 231.07 wind 9.0 270 < th dose dependent rect. 23 4
977 231.61 radiation 20.0 270 < th dose dependent rect. 3 21