BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0782500 Os03g0782500|AK105637
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 642 0.0
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 213 1e-55
AK060245 154 9e-38
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 143 3e-34
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 122 5e-28
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 111 8e-25
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 109 3e-24
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 102 7e-22
Os06g0184000 84 2e-16
Os03g0797600 Similar to Helix-loop-helix protein homolog 77 2e-14
Os06g0193400 Similar to Helix-loop-helix protein homolog 75 7e-14
Os08g0536800 Similar to TA1 protein (Fragment) 73 3e-13
Os02g0795800 73 4e-13
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 73 4e-13
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 72 6e-13
Os10g0556200 Similar to SPATULA 71 1e-12
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 71 2e-12
Os03g0802900 Similar to MYC1 69 4e-12
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 69 6e-12
Os09g0474100 Similar to TA1 protein (Fragment) 68 2e-11
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/410 (78%), Positives = 322/410 (78%)
Query: 1 MAICSTDNELVELLWHNXXXXXXXXXXXXXXXXXXXXGQSASVLTGDDTETAAWFPDTLD 60
MAICSTDNELVELLWHN GQSASVLTGDDTETAAWFPDTLD
Sbjct: 1 MAICSTDNELVELLWHNGGVVAQPQAAQARVVSSSGRGQSASVLTGDDTETAAWFPDTLD 60
Query: 61 DALEKDLYTQLWRSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRSGIGSSWTGDIC 120
DALEKDLYTQLWRSVT MRSGIGSSWTGDIC
Sbjct: 61 DALEKDLYTQLWRSVTGDAFPAAAAAGPSSHHAPPPDLPPPAARPPMRSGIGSSWTGDIC 120
Query: 121 SAFCGSNHIPETAAQRCRDAGAALPPERPRRXXXXXXXXXXXXXXXXXXXXXXXLPSESA 180
SAFCGSNHIPETAAQRCRDAGAALPPERPRR LPSESA
Sbjct: 121 SAFCGSNHIPETAAQRCRDAGAALPPERPRRSSTHDGAGTSSSGGSGSNFGASGLPSESA 180
Query: 181 SAHKRKGREDSDSRSEDAECEATEEXXXXXXXXXXXXXXXAAEVHNLSERRRRDRINEKM 240
SAHKRKGREDSDSRSEDAECEATEE AAEVHNLSERRRRDRINEKM
Sbjct: 181 SAHKRKGREDSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKM 240
Query: 241 RALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVG 300
RALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVG
Sbjct: 241 RALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVG 300
Query: 301 MNSACMPAAQGLSHMSRLPYMNHSMPNHIPLNSSPAMNPMNVANQMQNIQLREASNPFLH 360
MNSACMPAAQGLSHMSRLPYMNHSMPNHIPLNSSPAMNPMNVANQMQNIQLREASNPFLH
Sbjct: 301 MNSACMPAAQGLSHMSRLPYMNHSMPNHIPLNSSPAMNPMNVANQMQNIQLREASNPFLH 360
Query: 361 PDGWQTVPPQVSGPYASGPQVAQQNQIPKASASTVLPNSGAEQPPTSDGI 410
PDGWQTVPPQVSGPYASGPQVAQQNQIPKASASTVLPNSGAEQPPTSDGI
Sbjct: 361 PDGWQTVPPQVSGPYASGPQVAQQNQIPKASASTVLPNSGAEQPPTSDGI 410
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 123/155 (79%), Gaps = 4/155 (2%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTT 280
AAEVHNLSERRRRDRINEK+RALQEL+PHCNKTDKASILDEAIEYLKSLQMQVQIMWMTT
Sbjct: 230 AAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTT 289
Query: 281 GMAPMMFPGAHQFMPPMAVGMNSACMPA--AQGLSHMSRLP-YMNHSMPNHIPLNSSPAM 337
G+ PMMFPG HQ MPPM +G+N+ACMP AQGL+ M R YMN+S+PN +P SPAM
Sbjct: 290 GIVPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAM 349
Query: 338 NPMNVANQMQNI-QLREASNPFLHPDGWQTVPPQV 371
N +V + MQN ++R NPFLH + T QV
Sbjct: 350 NAPSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQV 384
>AK060245
Length = 163
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Query: 258 ILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVGMNSACMPA--AQGLSHM 315
ILDEAIEYLKSLQMQVQIMWMTTG+ PMMFPG HQ MPPM +G+N+ACMP AQGL+ M
Sbjct: 12 ILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQM 71
Query: 316 SRLP-YMNHSMPNHIPLNSSPAMNPMNVANQMQNI-QLREASNPFLHPDGWQTVPPQVSG 373
R YMN+S+PN +P SPAMN +V + MQN ++R NPFLH + T QV G
Sbjct: 72 QRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQVPG 131
Query: 374 PYASGPQVAQQNQIPKASASTVLPNS 399
+ G Q+A+QN+I + + V+P+S
Sbjct: 132 LFTYGSQIAEQNEIQELLSGAVIPSS 157
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 184 KRKGRE----DSDSRSEDAECEATEEXXXXXXXXXXXXXXXAAEVHNLSERRRRDRINEK 239
KRK R +S S SED E E+ AAEVHNLSERRRRDRINEK
Sbjct: 229 KRKQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEK 288
Query: 240 MRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAP--MMFP--GAHQFMP 295
M+ALQELIPHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM GMAP +MFP G HQ+M
Sbjct: 289 MKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVMFPAAGVHQYMQ 348
Query: 296 PM-AVGMN 302
M AVGM
Sbjct: 349 RMGAVGMG 356
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 4/81 (4%)
Query: 222 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG 281
AEVHNLSERRRRDRINEKMRALQELIP+CNK DKAS+LDEAIEYLK+LQ+QVQ+M M TG
Sbjct: 386 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
Query: 282 MA--PMMFPGAHQFM--PPMA 298
+ PM+ P A Q + PPMA
Sbjct: 446 LCIPPMLLPTAMQHLQIPPMA 466
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 58/61 (95%)
Query: 222 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG 281
AEVHNLSERRRRDRINEKMRALQELIP+CNK DKAS+L+EAIEYLK+LQ+QVQ+M M TG
Sbjct: 337 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSMGTG 396
Query: 282 M 282
M
Sbjct: 397 M 397
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 62/73 (84%)
Query: 222 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG 281
AE HN SERRRRDRINEK++ALQEL+P+C KTDK S+LDEAI+YLKSLQ+Q+Q++ M G
Sbjct: 15 AEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKG 74
Query: 282 MAPMMFPGAHQFM 294
MAP++ P Q+M
Sbjct: 75 MAPVVPPELQQYM 87
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 55/62 (88%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTT 280
AAEVHNLSE+RRR +INEKM+ALQ LIP+ NKTDKAS+LDEAIEYLK LQ+QVQ++ M
Sbjct: 27 AAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRN 86
Query: 281 GM 282
G+
Sbjct: 87 GV 88
>Os06g0184000
Length = 430
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 57/71 (80%), Gaps = 5/71 (7%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT- 279
A + H+++ER RR+RI E+M++LQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++ M+
Sbjct: 221 ATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 280
Query: 280 ----TGMAPMM 286
GMAP++
Sbjct: 281 LGGAAGMAPLV 291
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 51/59 (86%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT 279
A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A++LDE ++Y+K L++QV+++ M+
Sbjct: 140 ATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 51/64 (79%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTT 280
A + H+++ER RR++I+E+M+ LQ L+P+ NK DKAS+LDE I+Y+K LQ+QV+++ M+
Sbjct: 323 ATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSR 382
Query: 281 GMAP 284
AP
Sbjct: 383 LGAP 386
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 181 SAHKRKGREDSDSR------SEDAECEATEEXXXXXXXXXXXXXXXAAEVHNLSERRRRD 234
SAH + +D SR E E TE+ A + H+L+ER RR+
Sbjct: 102 SAHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAERVRRE 161
Query: 235 RINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM-TTGMAPMMF 287
RI+E+MR LQ L+P C+K T KA ILDE I Y++SLQ QV+ + M M+P+++
Sbjct: 162 RISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLY 216
>Os02g0795800
Length = 463
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 43/48 (89%)
Query: 232 RRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT 279
RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++ M+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 299
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM 278
A + H+L+ER RR+RI+E+MR LQEL+P CNK T KA +LDE I Y++SLQ QV+ + M
Sbjct: 171 ATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSM 229
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 181 SAHKRKGREDSDSRSEDAEC-EATEEXXXXXXXXXXXXXXXAAEVHNLSERRRRDRINEK 239
SAH ++ +E+ R + EE A + H+L+ER RR+RI+E+
Sbjct: 73 SAHSKEAKENGRKRGGKKHSRDQMEEEAPQGFIHVRARRGQATDSHSLAERVRRERISER 132
Query: 240 MRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM-TTGMAPMMF 287
MR LQ L+P C+K T KA ILDE I Y++SLQ QV+ + M ++P+++
Sbjct: 133 MRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLSPVLY 182
>Os10g0556200 Similar to SPATULA
Length = 191
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 40/45 (88%)
Query: 231 RRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQI 275
+RRDRIN+KM+ LQ+L+P+ +KTDKAS+LDE I+YLK LQ QVQ+
Sbjct: 12 KRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV 56
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 47/57 (82%), Gaps = 3/57 (5%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNK---TDKASILDEAIEYLKSLQMQVQ 274
A + H+++ER RR+RI E+M+ALQEL+P+ NK TDKAS+LDE I+Y+K LQ+QV+
Sbjct: 257 ATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVK 313
>Os03g0802900 Similar to MYC1
Length = 265
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASILDEAIEYLKSLQMQVQIMWMT 279
A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ QV+ + M
Sbjct: 143 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSMK 202
Query: 280 TGMAPMMFPGAHQFMPPMAVG 300
+ PP G
Sbjct: 203 LEAVNAHVNNGIEAFPPKDFG 223
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 221 AAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWMT 279
A + H+L+ER RR+RI+E+M+ LQ L+P CNK T KA +LDE I Y++SLQ QV+ + M
Sbjct: 88 ATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEFLSMK 147
Query: 280 TG-MAPMMFPGAHQFMP 295
M P + +H +MP
Sbjct: 148 LATMNPQLDFDSH-YMP 163
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 175 LPSESA--SAH-KRKGREDSDSRSEDAECEA-----TEEXXXXXXXXXXXXXXXAAEVHN 226
LPS+SA S H K KG E S + + + + T E A H+
Sbjct: 201 LPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHS 260
Query: 227 LSERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM 278
L+ER RR++I+E+M+ LQ+L+P C+K T KA +LDE I Y++SLQ QV+ + M
Sbjct: 261 LAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,043,678
Number of extensions: 407570
Number of successful extensions: 1329
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 20
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)