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Os03g0797600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Helix-loop-helix protein homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0141) R2 : 0.759
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.28 (0.0343) R2dC : 0.736 R2C : 0.735
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.175 (0.0297) R2dN8 : 0.0238 R2N8 : 0.0233
σ : 0.266
deviance : 32.33
__
_____
C
peak time of C : 1.95
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.59 0.233 11.9 -0.0529 1.22 0.267 0.755 -1.35 0.03 2.23 25.6 828 -- --
26.95 0.242 11.9 0.298 1.26 0.172 0.576 -- 0.173 2.01 25.11 6546 -- --
26.34 0.239 11.9 -0.0397 1.24 0.264 -- -1.36 0.0552 2.22 26.21 807 -- --
27.91 0.246 11.9 0.274 1.26 0.173 -- -- 0.17 1.96 25.26 6664 -- --
90.14 0.445 11.8 0.457 -- -0.585 -- -0.365 0.403 -- 26.21 807 -- --
27.93 0.248 11.9 0.372 1.27 -- 0.528 -- 0.218 1.97 -- -- -- --
28.99 0.252 11.9 0.356 1.27 -- -- -- 0.215 1.94 -- -- -- --
90.47 0.445 11.8 0.542 -- -0.597 -- -- 0.428 -- 26.26 1039 -- --
28.23 0.247 11.9 -- 1.26 0.299 -- -- 0.0602 1.94 24.6 47520 -- --
126.51 0.526 11.9 0.408 -- -- -- -- 0.244 -- -- -- -- --
32.33 0.266 11.9 -- 1.28 -- -- -- 0.175 1.95 -- -- -- --
98.13 0.463 11.8 -- -- -0.566 -- -- 0.359 -- 26.26 1039 -- --
130.91 0.534 11.9 -- -- -- -- -- 0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.10 temperature 10.0 90 > th dose dependent rect. 18 11
3 23.32 wind 5.0 720 < th dose independent rect. 17 2
8 23.61 wind 7.0 720 < th dose dependent rect. 17 2
10 23.64 temperature 10.0 720 > th dose dependent rect. 17 2
14 23.72 temperature 25.0 270 < th dose independent sin 11 NA
15 23.73 temperature 25.0 720 > th dose independent rect. 17 2
16 23.75 temperature 25.0 720 > th dose dependent rect. 17 2
25 23.96 temperature 25.0 270 < th dose independent rect. 19 13
36 24.04 temperature 25.0 720 > th dose dependent rect. 16 11
49 24.08 temperature 25.0 720 > th dose dependent rect. 16 5
68 24.17 temperature 25.0 720 < th dose independent rect. 19 5
71 24.18 temperature 25.0 720 > th dose dependent sin 13 NA
78 24.22 temperature 25.0 720 > th dose dependent rect. 16 18
79 24.23 temperature 25.0 720 < th dose independent rect. 18 7
101 24.28 temperature 25.0 720 < th dose independent sin 14 NA
108 24.29 wind 9.0 90 < th dose dependent rect. 18 11
112 24.30 wind 5.0 90 < th dose independent rect. 15 14
142 24.39 temperature 25.0 720 < th dose independent rect. 15 17
144 24.40 temperature 25.0 270 > th dose independent rect. 16 13
160 24.44 radiation 1.0 720 > th dose independent rect. 17 1
175 24.46 wind 1.0 720 > th dose dependent rect. 21 2
183 24.48 radiation 10.0 720 < th dose independent rect. 17 2
200 24.52 temperature 25.0 270 > th dose independent sin 12 NA
203 24.52 wind 5.0 90 < th dose independent rect. 17 12
216 24.53 temperature 25.0 270 > th dose independent rect. 16 16
225 24.54 atmosphere 995.0 30 > th dose dependent rect. 5 13
231 24.55 atmosphere 1015.0 720 < th dose independent rect. 7 14
234 24.55 temperature 30.0 720 < th dose dependent rect. 21 2
235 24.55 temperature 30.0 270 < th dose dependent rect. 20 11
237 24.55 wind 9.0 90 < th dose dependent rect. 15 14
261 24.58 atmosphere 1010.0 90 < th dose independent rect. 18 11
265 24.58 radiation 10.0 10 < th dose dependent rect. 18 12
273 24.60 temperature 25.0 720 > th dose independent sin 17 NA
278 24.60 radiation 1.0 720 < th dose dependent rect. 17 7
303 24.63 humidity 50.0 90 > th dose independent rect. 5 13
309 24.63 temperature 15.0 10 > th dose dependent rect. 16 13
317 24.64 radiation 10.0 10 < th dose dependent rect. 7 23
331 24.66 temperature 25.0 720 > th dose independent rect. 9 17
358 24.69 atmosphere 1015.0 720 < th dose independent rect. 23 6
373 24.70 temperature 10.0 90 > th dose dependent rect. 9 20
374 24.70 radiation 10.0 10 < th dose dependent rect. 18 23
376 24.71 temperature 15.0 90 > th dose independent rect. 18 11
396 24.73 precipitation 0.1 90 < th dose independent rect. 18 11
402 24.73 precipitation 0.1 90 < th dose dependent rect. 18 11
414 24.74 precipitation 0.1 720 < th dose independent rect. 7 22
420 24.74 radiation 40.0 90 < th dose dependent rect. 13 16
421 24.74 precipitation 0.1 720 < th dose dependent rect. 7 22
431 24.75 radiation 10.0 30 < th dose independent rect. 7 22
434 24.75 radiation 40.0 90 < th dose dependent rect. 15 14
435 24.75 temperature 10.0 90 > th dose dependent rect. 7 22
446 24.76 temperature 25.0 720 > th dose independent rect. 15 21
452 24.76 radiation 10.0 10 < th dose dependent rect. 18 18
456 24.77 radiation 10.0 90 < th dose independent rect. 18 11
459 24.77 atmosphere 995.0 720 > th dose dependent rect. 5 2
465 24.77 radiation 10.0 10 < th dose dependent rect. 18 16
477 24.78 wind 9.0 720 < th dose independent rect. 9 10
483 24.78 wind 9.0 720 < th dose independent rect. 7 14
485 24.78 atmosphere 1015.0 720 < th dose independent rect. 17 18
489 24.78 radiation 10.0 90 < th dose dependent rect. 18 11
497 24.79 humidity 50.0 90 > th dose independent rect. 18 11
498 24.79 atmosphere 995.0 90 > th dose independent rect. 18 11
502 24.79 temperature 10.0 90 > th dose independent rect. 5 13
503 24.79 atmosphere 1015.0 90 < th dose independent rect. 5 13
504 24.79 wind 9.0 720 < th dose independent rect. 15 14
528 24.81 atmosphere 1010.0 720 < th dose independent rect. 17 2
537 24.81 wind 9.0 720 < th dose independent rect. 7 22
555 24.82 temperature 30.0 90 < th dose dependent rect. 21 14
568 24.84 wind 3.0 720 > th dose independent rect. 21 2
580 24.85 wind 1.0 720 > th dose independent rect. 17 2
608 24.87 atmosphere 1015.0 720 < th dose independent rect. 15 14
611 24.87 temperature 10.0 90 > th dose dependent sin 12 NA
615 24.88 temperature 15.0 720 > th dose independent rect. 9 10
616 24.88 atmosphere 1015.0 720 < th dose independent rect. 17 10
617 24.88 precipitation 0.1 720 < th dose independent rect. 17 10
619 24.88 precipitation 0.1 90 < th dose independent rect. 5 13
628 24.88 temperature 20.0 30 > th dose dependent rect. 2 3
630 24.88 precipitation 0.1 720 < th dose dependent rect. 17 10
632 24.88 precipitation 0.1 90 < th dose dependent rect. 5 13
640 24.89 temperature 30.0 270 < th dose dependent sin 10 NA
642 24.89 temperature 20.0 30 > th dose dependent rect. 24 5
646 24.90 atmosphere 1015.0 720 < th dose independent rect. 9 10
647 24.90 temperature 10.0 720 > th dose independent rect. 19 14
648 24.90 humidity 50.0 720 > th dose independent rect. 19 14
649 24.90 atmosphere 995.0 720 > th dose independent rect. 19 14
658 24.90 radiation 10.0 10 < th dose dependent rect. 14 16
660 24.91 temperature 10.0 720 > th dose independent rect. 21 10
662 24.91 humidity 50.0 720 > th dose independent rect. 21 10
664 24.91 atmosphere 995.0 720 > th dose independent rect. 21 10
665 24.91 radiation 30.0 720 < th dose independent rect. 21 10
667 24.91 temperature 10.0 720 > th dose independent rect. 7 14
669 24.91 radiation 40.0 720 < th dose independent rect. 15 14
671 24.91 wind 5.0 14400 > th dose dependent rect. 18 1
701 24.93 temperature 15.0 720 > th dose independent rect. 17 2
728 24.94 radiation 40.0 720 < th dose independent rect. 19 14
729 24.94 precipitation 0.1 720 < th dose independent rect. 7 14
738 24.94 precipitation 0.1 720 < th dose dependent rect. 7 14
744 24.95 wind 5.0 720 < th dose independent rect. 5 2
746 24.95 precipitation 0.1 720 < th dose independent rect. 9 10
748 24.95 wind 9.0 720 < th dose independent rect. 17 18
752 24.95 precipitation 0.1 720 < th dose dependent rect. 9 10
755 24.96 wind 9.0 720 < th dose independent rect. 17 10
758 24.96 wind 9.0 90 < th dose independent rect. 5 13
771 24.96 temperature 10.0 720 > th dose dependent rect. 9 18
778 24.97 temperature 10.0 720 > th dose independent rect. 5 2
779 24.97 temperature 30.0 720 < th dose independent rect. 5 2
781 24.97 humidity 50.0 720 > th dose independent rect. 5 2
783 24.97 atmosphere 995.0 720 > th dose independent rect. 5 2
784 24.97 atmosphere 1015.0 720 < th dose independent rect. 5 2
785 24.97 radiation 40.0 720 < th dose independent rect. 5 2
790 24.97 radiation 10.0 90 < th dose independent rect. 15 14
796 24.97 temperature 10.0 720 > th dose independent rect. 7 22
801 24.97 radiation 10.0 30 < th dose dependent rect. 18 14
813 24.98 precipitation 0.1 720 < th dose independent rect. 17 2
819 24.98 wind 1.0 90 > th dose independent rect. 5 13
825 24.98 temperature 10.0 720 > th dose independent rect. 19 22
829 24.98 precipitation 0.1 720 < th dose dependent rect. 17 2
835 24.98 radiation 40.0 30 < th dose dependent rect. 9 20
839 24.99 precipitation 0.1 720 < th dose independent rect. 5 2
840 24.99 temperature 15.0 720 > th dose independent rect. 23 6
854 24.99 humidity 50.0 720 > th dose independent rect. 19 22
860 24.99 precipitation 0.1 720 < th dose dependent rect. 5 2
871 25.00 wind 9.0 720 < th dose independent rect. 21 10
885 25.01 wind 9.0 720 < th dose independent rect. 19 14
892 25.01 temperature 25.0 4320 > th dose dependent rect. 18 3
905 25.02 humidity 80.0 720 > th dose independent rect. 5 2
924 25.03 wind 7.0 14400 < th dose independent rect. 18 1
931 25.03 temperature 15.0 720 > th dose independent rect. 17 18
933 25.03 wind 9.0 720 < th dose independent rect. 24 19
956 25.04 temperature 25.0 4320 > th dose dependent rect. 17 8
959 25.04 radiation 40.0 30 < th dose dependent rect. 2 10
968 25.05 radiation 1.0 720 < th dose independent rect. 17 7
974 25.05 radiation 1.0 10 < th dose independent rect. 18 14
980 25.05 precipitation 0.1 720 < th dose independent rect. 23 22
985 25.05 temperature 25.0 4320 > th dose dependent rect. 20 1
997 25.05 temperature 25.0 4320 > th dose dependent rect. 17 12