BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0797600 Os03g0797600|AK067446
(294 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02590.1 | chr4:1137968-1140306 REVERSE LENGTH=311 173 1e-43
AT1G03040.1 | chr1:704279-706457 REVERSE LENGTH=303 166 2e-41
AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351 129 2e-30
AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311 126 1e-29
AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298 125 3e-29
AT1G09530.1 | chr1:3077216-3079367 FORWARD LENGTH=525 54 1e-07
AT4G36930.1 | chr4:17414167-17415945 FORWARD LENGTH=374 51 6e-07
AT5G67110.1 | chr5:26785332-26786338 REVERSE LENGTH=211 50 2e-06
AT2G20180.2 | chr2:8704525-8706538 REVERSE LENGTH=479 50 2e-06
AT4G33880.1 | chr4:16239566-16241052 REVERSE LENGTH=353 49 4e-06
>AT4G02590.1 | chr4:1137968-1140306 REVERSE LENGTH=311
Length = 310
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 103/158 (65%), Gaps = 3/158 (1%)
Query: 139 QATDPHSXXXXXXXXXXXXXXXXXQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
QATDPHS QELVP NKTDRAAM+DEI+DYVKFLRLQVKVLSMS
Sbjct: 152 QATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMS 211
Query: 199 RXXXXXXXXXXXXDIPLS--VKGEASDSGGNQQ-IWEKWSTDGTERQVAKLMEEDIGAAM 255
R D+PLS V+ E + G Q WEKWS DGTERQVAKLMEE++GAAM
Sbjct: 212 RLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAM 271
Query: 256 QFLQSKALCMMPISLAMAIYDTQQTQDGQPVKHEPNTP 293
Q LQSKALCMMPISLAMAIY +Q VK E N P
Sbjct: 272 QLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309
>AT1G03040.1 | chr1:704279-706457 REVERSE LENGTH=303
Length = 302
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 96/140 (68%), Gaps = 4/140 (2%)
Query: 139 QATDPHSXXXXXXXXXXXXXXXXXQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
QATDPHS QELVP NKTDRAAM+DEI+DYVKFLRLQVKVLSMS
Sbjct: 150 QATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMS 209
Query: 199 RXXXXXXXXXXXXDIPLSVKGEASDSGGNQQIWEKWSTDGTERQVAKLMEEDIGAAMQFL 258
R ++PLS +S Q +WEKWS DGTERQVAKLMEE++GAAMQ L
Sbjct: 210 RLGGAGAVAPLVTEMPLS----SSVEDETQAVWEKWSNDGTERQVAKLMEENVGAAMQLL 265
Query: 259 QSKALCMMPISLAMAIYDTQ 278
QSKALC+MPISLAMAIY +Q
Sbjct: 266 QSKALCIMPISLAMAIYHSQ 285
>AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351
Length = 350
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 139 QATDPHSXXXXXXXXXXXXXXXXXQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
QATDPHS QELVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMS
Sbjct: 144 QATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMS 203
Query: 199 RXXXXXXXXXXXXDIPLSVKGEASDS--GGNQQIWEKW-STDGTERQVAKLMEEDIGAAM 255
R + S G AS + GG+Q S TE QVAKLMEED+G+AM
Sbjct: 204 RLGGAASVSSQISEAGGS-HGNASSAMVGGSQTAGNSNDSVTMTEHQVAKLMEEDMGSAM 262
Query: 256 QFLQSKALCMMPISLAMAI 274
Q+LQ K LC+MPISLA AI
Sbjct: 263 QYLQGKGLCLMPISLATAI 281
>AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311
Length = 310
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 84/140 (60%), Gaps = 17/140 (12%)
Query: 139 QATDPHSXXXXXXXXXXXXXXXXXQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
QATDPHS QELVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMS
Sbjct: 136 QATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMS 195
Query: 199 RXXXXXXXXXXXXDIPLSVKGEASDSGGNQQIWEKWSTDG----TERQVAKLMEEDIGAA 254
R + D+GG+ E S+ G TE QVAKLMEED+G+A
Sbjct: 196 RLGGAASASSQISE----------DAGGSH---ENTSSSGEAKMTEHQVAKLMEEDMGSA 242
Query: 255 MQFLQSKALCMMPISLAMAI 274
MQ+LQ K LC+MPISLA I
Sbjct: 243 MQYLQGKGLCLMPISLATTI 262
>AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298
Length = 297
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 139 QATDPHSXXXXXXXXXXXXXXXXXQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
QATDPHS QELVPNTNKTD+A+MLDEI++YV+FL+LQVKVLSMS
Sbjct: 105 QATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMS 164
Query: 199 RXXXXXXXXXXXXDIPLSVKGEAS---------DSGGNQQIWEKWSTDGTERQVAKLMEE 249
R + G + + GN S TE++VAKLMEE
Sbjct: 165 RLGGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEE 224
Query: 250 DIGAAMQFLQSKALCMMPISLAMAI 274
D+G+AMQ+LQ K LC+MPISLA AI
Sbjct: 225 DMGSAMQYLQGKGLCLMPISLATAI 249
>AT1G09530.1 | chr1:3077216-3079367 FORWARD LENGTH=525
Length = 524
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 32/36 (88%)
Query: 163 QELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
QEL+PN NK D+A+MLDE ++Y+K L+LQV+++SM+
Sbjct: 367 QELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMA 402
>AT4G36930.1 | chr4:17414167-17415945 FORWARD LENGTH=374
Length = 373
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 32/35 (91%)
Query: 163 QELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSM 197
Q L+PN+NKTD+A+MLDE ++Y+K L+LQV++L+M
Sbjct: 221 QSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 255
>AT5G67110.1 | chr5:26785332-26786338 REVERSE LENGTH=211
Length = 210
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 32/35 (91%)
Query: 163 QELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSM 197
Q+L+PN+NKTD+A+MLDE ++Y+K L+LQV+ L++
Sbjct: 117 QKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTLAV 151
>AT2G20180.2 | chr2:8704525-8706538 REVERSE LENGTH=479
Length = 478
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 31/35 (88%)
Query: 163 QELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSM 197
QEL+P NK+D+A+MLDE ++Y+K L+LQ++++SM
Sbjct: 308 QELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSM 342
>AT4G33880.1 | chr4:16239566-16241052 REVERSE LENGTH=353
Length = 352
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 140 ATDPHSXXXXXXXXXXXXXXXXXQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLS 196
ATDP S Q LVPN K D + ML+E + YVKFL+LQ+K+LS
Sbjct: 273 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLS 329
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,836,747
Number of extensions: 104157
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 10
Length of query: 294
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,419,801
Effective search space: 1650280996
Effective search space used: 1650280996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)