Os06g0164400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os06g0164400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.09 | 0.415 | 8.69 | -0.574 | 2.03 | -0.773 | -0.808 | -0.192 | -0.528 | 4.56 | 68 | 1374 | -- | -- |
| 78.14 | 0.412 | 8.69 | -0.59 | 2.03 | -0.783 | -0.793 | -- | -0.531 | 4.55 | 68.17 | 1374 | -- | -- |
| 79.82 | 0.416 | 8.69 | -0.579 | 2.02 | -0.765 | -- | -0.103 | -0.525 | 4.57 | 68.03 | 1363 | -- | -- |
| 79.84 | 0.416 | 8.69 | -0.59 | 2.02 | -0.769 | -- | -- | -0.527 | 4.58 | 68 | 1356 | -- | -- |
| 224.54 | 0.702 | 8.67 | -0.541 | -- | 1.26 | -- | -0.385 | -0.293 | -- | 68 | 1227 | -- | -- |
| 87.98 | 0.44 | 8.67 | -0.598 | 2.08 | -- | -0.733 | -- | -0.446 | 4.52 | -- | -- | -- | -- |
| 89.42 | 0.443 | 8.67 | -0.593 | 2.08 | -- | -- | -- | -0.442 | 4.53 | -- | -- | -- | -- |
| 225.09 | 0.702 | 8.67 | -0.556 | -- | 1.24 | -- | -- | -0.297 | -- | 68 | 1356 | -- | -- |
| 86.85 | 0.434 | 8.7 | -- | 2.03 | -0.869 | -- | -- | -0.52 | 4.5 | 83.54 | 1445 | -- | -- |
| 319.75 | 0.836 | 8.69 | -0.512 | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
| 98.69 | 0.465 | 8.66 | -- | 2.07 | -- | -- | -- | -0.376 | 4.54 | -- | -- | -- | -- |
| 233.25 | 0.714 | 8.65 | -- | -- | 1.23 | -- | -- | -0.235 | -- | 68 | 1356 | -- | -- |
| 326.67 | 0.844 | 8.67 | -- | -- | -- | -- | -- | -0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.93 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 73.17 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 21 | 75.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 24 | 75.49 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 25 | 75.55 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 28 | 75.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 29 | 75.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 31 | 75.89 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 32 | 75.97 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 34 | 75.99 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 36 | 76.01 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 46 | 76.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 64 | 76.63 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 72 | 76.69 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 73 | 76.69 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 79 | 76.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 13 |
| 84 | 76.74 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 86 | 76.75 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 88 | 76.75 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 106 | 76.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 9 |
| 135 | 76.99 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 136 | 77.00 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 137 | 77.00 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 154 | 77.18 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 161 | 77.25 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 163 | 77.25 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 19 | 19 |
| 174 | 77.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 213 | 77.49 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 214 | 77.49 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 216 | 77.50 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 220 | 77.50 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 224 | 77.51 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 230 | 77.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 231 | 77.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 234 | 77.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 239 | 77.56 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 306 | 77.68 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 357 | 77.78 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 386 | 77.86 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 389 | 77.87 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 394 | 77.88 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 401 | 77.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 404 | 77.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 407 | 77.91 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 410 | 77.92 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 411 | 77.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 413 | 77.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 415 | 77.92 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 22 | 17 |
| 431 | 77.96 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 433 | 77.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 20 |
| 435 | 77.97 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 437 | 77.97 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 452 | 77.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 484 | 78.05 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 494 | 78.06 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 517 | 78.09 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 536 | 78.11 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 8 | NA |
| 537 | 78.11 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 8 | NA |
| 540 | 78.11 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 8 | NA |
| 544 | 78.11 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 22 | 17 |
| 547 | 78.12 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 570 | 78.15 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 8 | NA |
| 581 | 78.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 595 | 78.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 643 | 78.25 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 649 | 78.26 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 651 | 78.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 5 |
| 656 | 78.26 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 659 | 78.27 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 662 | 78.27 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 10 |
| 663 | 78.27 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 691 | 78.30 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 697 | 78.31 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 713 | 78.32 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 732 | 78.34 | humidity | 90.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 761 | 78.36 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 769 | 78.37 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 775 | 78.37 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 789 | 78.38 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 815 | 78.41 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 826 | 78.41 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 846 | 78.44 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 859 | 78.45 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 897 | 78.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 904 | 78.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 929 | 78.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 933 | 78.52 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 21 |
| 969 | 78.55 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 15 |
| 970 | 78.55 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 20 |