BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0164400 Os06g0164400|J090078N13
(188 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 282 1e-76
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 106 8e-24
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 102 2e-22
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 100 8e-22
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 96 1e-20
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 94 5e-20
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 89 2e-18
Os06g0184000 80 8e-16
Os06g0193400 Similar to Helix-loop-helix protein homolog 79 2e-15
Os03g0797600 Similar to Helix-loop-helix protein homolog 76 2e-14
Os02g0795800 75 3e-14
Os10g0556200 Similar to SPATULA 73 1e-13
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 70 8e-13
Os09g0501600 Similar to MYC1 68 4e-12
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 142/159 (89%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVY 89
VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVY
Sbjct: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVY 89
Query: 90 LNPSYLSGALEPAQASQMFAALGGNNVTVVHPGTVMPPVNQSSGAHHLFDXXXXXXXXXX 149
LNPSYLSGALEPAQASQMFAALGGNNVTVVHPGTVMPPVNQSSGAHHLFD
Sbjct: 90 LNPSYLSGALEPAQASQMFAALGGNNVTVVHPGTVMPPVNQSSGAHHLFDPLNSPPQNQP 149
Query: 150 XXXXXXXVPSTAIPEPPFHLESSQSHLRQFQLPGSSEVI 188
VPSTAIPEPPFHLESSQSHLRQFQLPGSSEVI
Sbjct: 150 QSLILPSVPSTAIPEPPFHLESSQSHLRQFQLPGSSEVI 188
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 58/71 (81%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVY 89
VHNLSE+RRR +INEKM+ALQ LIPN NK DKASMLDEAIEYLK LQLQVQM+SM G+
Sbjct: 388 VHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGLC 447
Query: 90 LNPSYLSGALE 100
+ P L A++
Sbjct: 448 IPPMLLPTAMQ 458
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVY 89
VHNLSE+RRR +INEKM+ALQ LIPN NK DKASML+EAIEYLK LQLQVQM+SM G++
Sbjct: 339 VHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSMGTGMF 398
Query: 90 L 90
+
Sbjct: 399 V 399
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 52/59 (88%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 88
VHNLSE+RRR +INEKMKALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+QM+ M G+
Sbjct: 273 VHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGM 331
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 52/59 (88%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 88
VHNLSE+RRR +INEKM+ALQ LIP+ NKTDKAS+LDEAIEYLK LQ+QVQ++ M G+
Sbjct: 224 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGM 282
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 52/59 (88%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 88
VHNLSE+RRR +INEK++ALQ L+P+ NKTDKAS+LDEAIEYLK LQ+QVQ++ M G+
Sbjct: 233 VHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGI 291
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 48/59 (81%)
Query: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 88
HN SE+RRR +INEK+KALQ L+PN KTDK SMLDEAI+YLK LQLQ+QML M G+
Sbjct: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGM 75
>Os06g0184000
Length = 430
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 48/54 (88%)
Query: 31 HNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 84
H+++E+ RR +I E+MK+LQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 225 HSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 278
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 31 HNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 84
H+++E+ RR KI+E+MK LQ L+PNSNK DKASMLDE I+Y+K LQLQV++LSM
Sbjct: 327 HSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSM 380
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 48/54 (88%)
Query: 31 HNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 84
H+++E+ RR +I E+M+ALQ L+PN+NKTD+A+MLDE ++Y+K L+LQV++LSM
Sbjct: 144 HSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSM 197
>Os02g0795800
Length = 463
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 38 RRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 84
RR +I E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 298
>Os10g0556200 Similar to SPATULA
Length = 191
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 39/44 (88%)
Query: 37 RRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 80
+RR +IN+KMK LQ L+PNS+KTDKASMLDE I+YLKQLQ QVQ
Sbjct: 12 KRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQ 55
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 44/53 (83%), Gaps = 3/53 (5%)
Query: 31 HNLSEKRRRSKINEKMKALQSLIPNSNK---TDKASMLDEAIEYLKQLQLQVQ 80
H+++E+ RR +I E+MKALQ L+PN+NK TDKASMLDE I+Y+K LQLQV+
Sbjct: 261 HSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVK 313
>Os09g0501600 Similar to MYC1
Length = 366
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 31 HNLSEKRRRSKINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQMLSMRNGVY 89
H+L+E+ RR KI+++MK LQ L+P NK KA MLDE I Y++ LQ QV+ LSM+
Sbjct: 185 HSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLAT- 243
Query: 90 LNPSYLSGALEPAQASQMFAALGGNNVTVVHP----GTVMPPVNQS 131
+NP G L MF + G +V V P GT P +Q+
Sbjct: 244 VNPQLDFGNLSTLLQKDMFQSC-GPSVNSVFPLESAGTAFPFCDQA 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,737,812
Number of extensions: 158051
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 14
Length of query: 188
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,075,471
Effective search space: 1123018803
Effective search space used: 1123018803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)