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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0139100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.63 (0.0496) R2 : 0.823
β1 : 2.14 (0.18) R2dD : 0.0569 R2D : 0.0101
β2 : 1.28 (0.167) R2dC : 0.0432 R2C : 0.22
β3 : -3.28 (0.129) R2dE : 0.475 R2E : 0.665
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.25 (0.106) R2dN8 : 0.0746 R2N8 : 0.0588
σ : 0.921
deviance : 391.29
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_____
C
peak time of C : 9.05
E
wheather : radiation
threshold : 1.899
memory length : 80
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.87
open length of G : 23.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
393.3 0.932 6.62 2.12 1.28 -3.19 0.247 0.494 1.27 9.55 1.928 78 5.05 23.3
391.82 0.922 6.61 2.13 1.31 -3.21 -0.152 -- 1.29 9.29 2.01 77 4.97 23.4
390.91 0.921 6.62 2.14 1.28 -3.26 -- 0.303 1.25 9.13 1.92 79 4.9 23.4
391.29 0.921 6.63 2.14 1.28 -3.28 -- -- 1.25 9.05 1.899 80 4.87 23.4
465.09 1 6.73 2.14 -- -3.42 -- 0.253 1.34 -- 1.78 79 5.17 23.1
548.64 1.1 6.49 2.28 4.73 -- -0.312 -- 1.56 11.3 -- -- -- --
549.06 1.1 6.49 2.27 4.73 -- -- -- 1.56 11.3 -- -- -- --
443.55 0.981 6.7 2.14 -- -3.82 -- -- 1.4 -- 2.02 66 5.17 23.3
512.91 1.05 6.66 -- 1.26 -3.24 -- -- 1.13 9.06 1.78 82 4.8 23.3
1952.8 2.06 6.6 2.15 -- -- -- -- 1.51 -- -- -- -- --
685.05 1.22 6.55 -- 4.71 -- -- -- 1.3 11.3 -- -- -- --
555.78 1.1 6.76 -- -- -3.91 -- -- 1.03 -- 1.592 78 5.1 23.1
2074.9 2.13 6.66 -- -- -- -- -- 1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 409.91 radiation 1 90 < th dose independent rect. 5 23
2 414.15 wind 3 43200 > th dose independent rect. 3 4
3 414.65 wind 3 43200 > th dose independent rect. 2 8
4 414.67 wind 3 43200 < th dose independent rect. 3 4
9 415.82 wind 3 43200 < th dose independent rect. 2 8
40 418.55 wind 3 43200 < th dose independent rect. 21 12
47 419.01 wind 3 43200 > th dose independent rect. 21 12
53 419.25 humidity 70 90 > th dose independent rect. 12 16
55 419.30 radiation 1 90 < th dose independent rect. 19 23
70 419.92 radiation 1 90 > th dose independent no NA NA
71 419.92 radiation 1 90 > th dose independent rect. 4 15
128 420.08 radiation 1 90 < th dose independent no NA NA
130 420.17 radiation 1 90 < th dose independent rect. 11 23
131 420.22 radiation 1 90 < th dose independent rect. 9 23
162 421.47 temperature 30 14400 < th dose independent rect. 14 1
164 421.52 radiation 1 90 < th dose independent rect. 17 23
166 421.59 wind 5 43200 < th dose dependent rect. 3 10
172 421.77 wind 9 43200 < th dose dependent rect. 3 10
177 421.99 temperature 30 14400 > th dose independent rect. 14 4
178 422.03 temperature 30 14400 < th dose independent rect. 14 4
181 422.12 temperature 30 14400 > th dose independent rect. 14 2
186 422.24 wind 1 43200 > th dose dependent rect. 3 10
194 422.38 wind 5 43200 < th dose dependent rect. 3 4
199 422.47 wind 3 43200 > th dose dependent rect. 5 2
203 422.61 wind 5 43200 < th dose dependent rect. 3 7
204 422.63 radiation 1 90 < th dose independent rect. 15 23
206 422.66 wind 1 43200 > th dose dependent rect. 3 4
208 422.68 wind 9 43200 < th dose dependent rect. 1 12
213 422.81 wind 3 43200 > th dose independent sin 7 NA
253 423.67 radiation 20 4320 > th dose dependent rect. 6 2
275 424.03 wind 5 14400 < th dose dependent rect. 3 1
280 424.12 humidity 70 10 > th dose independent rect. 12 17
286 424.25 temperature 30 14400 < th dose independent rect. 14 15
287 424.25 temperature 30 14400 < th dose independent rect. 14 17
289 424.27 wind 3 43200 < th dose independent sin 7 NA
292 424.30 temperature 30 14400 < th dose independent rect. 14 8
293 424.30 temperature 30 14400 < th dose independent rect. 14 10
294 424.31 temperature 30 14400 < th dose independent rect. 14 6
339 424.72 radiation 1 90 < th dose dependent rect. 5 23
343 424.78 radiation 1 90 < th dose dependent no NA NA
347 424.82 wind 1 43200 > th dose dependent rect. 3 7
350 424.86 radiation 1 90 < th dose dependent rect. 11 23
353 424.92 radiation 1 90 < th dose dependent rect. 9 23
365 425.09 temperature 30 14400 < th dose independent rect. 11 7
371 425.17 radiation 1 90 < th dose independent rect. 7 23
373 425.18 temperature 30 14400 > th dose dependent rect. 15 1
391 425.51 radiation 20 4320 > th dose independent rect. 6 2
489 426.21 temperature 30 14400 < th dose independent rect. 11 18
490 426.21 temperature 30 14400 < th dose independent rect. 11 20
492 426.23 temperature 30 270 < th dose independent rect. 11 16
493 426.24 temperature 30 14400 < th dose independent rect. 11 11
494 426.24 temperature 30 14400 < th dose independent rect. 11 13
502 426.26 temperature 30 14400 < th dose independent rect. 11 15
589 426.65 wind 1 43200 > th dose dependent sin 6 NA
592 426.73 wind 9 43200 < th dose dependent sin 6 NA
596 426.80 temperature 30 14400 > th dose independent sin 15 NA
603 426.83 temperature 30 14400 < th dose independent sin 15 NA
617 426.99 radiation 1 90 < th dose dependent rect. 17 23
635 427.20 humidity 50 270 > th dose dependent rect. 9 18
641 427.29 radiation 10 90 < th dose dependent sin 12 NA
644 427.30 radiation 1 90 < th dose dependent rect. 15 23
646 427.33 wind 9 43200 < th dose dependent rect. 11 1
659 427.49 wind 1 43200 > th dose dependent rect. 11 1
672 427.66 radiation 1 90 < th dose dependent rect. 7 23
776 428.63 radiation 1 90 < th dose dependent rect. 19 23
785 428.78 wind 1 43200 < th dose dependent rect. 24 4
792 428.83 temperature 30 14400 > th dose independent rect. 12 1
800 428.91 radiation 1 90 > th dose independent sin 11 NA
825 429.05 wind 7 43200 < th dose independent rect. 12 1
859 429.27 humidity 90 10 < th dose dependent rect. 16 17
885 429.43 wind 7 43200 > th dose dependent rect. 12 1
901 429.63 wind 7 43200 > th dose independent rect. 12 1
953 430.02 wind 1 14400 > th dose dependent rect. 3 1
957 430.07 radiation 40 1440 < th dose dependent rect. 1 5