Os01g0286100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os01g0286100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.75 | 0.577 | 12 | 0.77 | 1.07 | 2.46 | 0.716 | 0.0922 | 0.152 | 12.8 | 24.94 | 598 | -- | -- |
| 149.81 | 0.57 | 12 | 0.767 | 1.17 | 2.45 | 0.714 | -- | 0.149 | 12.8 | 24.97 | 504 | -- | -- |
| 151.8 | 0.574 | 12 | 0.725 | 1.17 | 2.49 | -- | 0.35 | 0.115 | 12.8 | 24.75 | 496 | -- | -- |
| 151.83 | 0.574 | 12 | 0.784 | 1.18 | 2.46 | -- | -- | 0.142 | 12.8 | 24.83 | 495 | -- | -- |
| 198.9 | 0.657 | 12 | 0.937 | -- | 2.98 | -- | 0.17 | 0.26 | -- | 28.83 | 903 | -- | -- |
| 239.72 | 0.726 | 12.1 | 0.121 | 1.28 | -- | 0.549 | -- | -0.349 | 11.9 | -- | -- | -- | -- |
| 241.02 | 0.727 | 12.1 | 0.143 | 1.28 | -- | -- | -- | -0.347 | 11.9 | -- | -- | -- | -- |
| 198.83 | 0.657 | 12 | 0.97 | -- | 3 | -- | -- | 0.272 | -- | 28.84 | 904 | -- | -- |
| 166.56 | 0.601 | 12 | -- | 1.19 | 2.13 | -- | -- | 0.00555 | 12.6 | 24.86 | 482 | -- | -- |
| 344.18 | 0.867 | 12.1 | 0.104 | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
| 241.56 | 0.727 | 12.1 | -- | 1.28 | -- | -- | -- | -0.363 | 11.9 | -- | -- | -- | -- |
| 220.65 | 0.692 | 12 | -- | -- | 2.6 | -- | -- | 0.0864 | -- | 29.1 | 894 | -- | -- |
| 344.47 | 0.866 | 12.1 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 11 | 140.44 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 13 | 140.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 18 | 141.30 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 403 | 153.23 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 404 | 153.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 410 | 153.45 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 427 | 153.55 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 430 | 153.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 435 | 153.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 459 | 154.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 477 | 154.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 508 | 154.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 516 | 154.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 524 | 154.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 558 | 155.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 567 | 155.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 593 | 155.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 622 | 155.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 650 | 156.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 668 | 156.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 713 | 156.45 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 720 | 156.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 789 | 156.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 790 | 156.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 798 | 156.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 824 | 156.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 845 | 156.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 847 | 156.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 864 | 157.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 866 | 157.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 998 | 157.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 22 |