BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0286100 Os01g0286100|AK102252
(637 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 1021 0.0
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 167 2e-41
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 123 5e-28
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 122 6e-28
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 122 6e-28
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 110 2e-24
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 108 1e-23
Os06g0184000 84 4e-16
Os03g0797600 Similar to Helix-loop-helix protein homolog 80 4e-15
Os06g0193400 Similar to Helix-loop-helix protein homolog 79 1e-14
Os02g0795800 76 7e-14
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 75 1e-13
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 74 2e-13
Os08g0524800 Similar to TA1 protein (Fragment) 74 5e-13
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 73 7e-13
Os01g0915600 Similar to TA1 protein (Fragment) 72 2e-12
Os10g0556200 Similar to SPATULA 71 2e-12
Os11g0634700 71 2e-12
Os03g0802900 Similar to MYC1 71 3e-12
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 68 2e-11
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/637 (83%), Positives = 533/637 (83%)
Query: 1 MSDGNDFAELLWENGQAVVHGRKKHPQPAFPPXXXXXXXXXXXXXXXXRAQERQPGGIDA 60
MSDGNDFAELLWENGQAVVHGRKKHPQPAFPP RAQERQPGGIDA
Sbjct: 1 MSDGNDFAELLWENGQAVVHGRKKHPQPAFPPFGFFGGTGGGGGGSSSRAQERQPGGIDA 60
Query: 61 FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPIIXXXXXXXXXXXXXXX 120
FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPII
Sbjct: 61 FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPIIDDEDAAAPAALAAAD 120
Query: 121 YGSDFFSELQXXXXXXXXXXPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL 180
YGSDFFSELQ PPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL
Sbjct: 121 YGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL 180
Query: 181 SVPTTRAEXXXXXXXXXXKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN 240
SVPTTRAE KLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN
Sbjct: 181 SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN 240
Query: 241 KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMXXXXXXXXXXXXXVNLH 300
KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEM VNLH
Sbjct: 241 KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLH 300
Query: 301 HEMGRDRAGRTMPVHKTEARKAPEATVATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS 360
HEMGRDRAGRTMPVHKTEARKAPEATVATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS
Sbjct: 301 HEMGRDRAGRTMPVHKTEARKAPEATVATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS 360
Query: 361 QDDDLDDEPGVLXXXXXXXXXXXXXAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA 420
QDDDLDDEPGVL AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA
Sbjct: 361 QDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA 420
Query: 421 SMLDEAIEYLKTLQLQVQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGMG 480
SMLDEAIEYLKTLQLQVQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGMG
Sbjct: 421 SMLDEAIEYLKTLQLQVQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGMG 480
Query: 481 VFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTIXXXXXXXXX 540
VFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTI
Sbjct: 481 VFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTIPSSASSVPP 540
Query: 541 XXXXXGLPVRPSGVPQVSGAMANMVXXXXXXXXXXXXXCLNKEAIQGANPGDSQMQIIMQ 600
GLPVRPSGVPQVSGAMANMV CLNKEAIQGANPGDSQMQIIMQ
Sbjct: 541 FASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGANPGDSQMQIIMQ 600
Query: 601 GDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET 637
GDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET
Sbjct: 601 GDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET 637
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 164/374 (43%), Positives = 187/374 (50%), Gaps = 59/374 (15%)
Query: 162 APVATTTTREPSKESHGGLSVPTTRAEXXXXXXXXXXKLPRSSGSGGGEGVMNFSLFSRP 221
A A+ +P SHG + VP+T A K R+SG GGG VMNF+ FSRP
Sbjct: 120 AAAASRVDPDPCSSSHGAV-VPSTSA--------AAAKQARTSGGGGGG-VMNFTFFSRP 169
Query: 222 AVLARATLESAQRTQGTDNKASNVTASNR----VESTVVQTASGP-RSAPAFADQRAAAW 276
QR G + +++ +A+ VESTVVQ A+ RS P F+DQR A W
Sbjct: 170 L---------QQRPSGGETASASASAAATSTVPVESTVVQAATNRLRSTPLFSDQRMA-W 219
Query: 277 PPQPKEMXXXXXXXXXXXXXVNLHHEMGR--------DRAGRTMPVHKTEARKAPEATVA 328
PK H + R + A AT
Sbjct: 220 LHPPKPSPRAAAPPPPPPLAPTTRHRLDTAAATATVAQRLPPSEARAPDAPPPAATATAT 279
Query: 329 TSSVCSGNGAGSDELWRQQKRKCQAQAECSASQDD-DLDDE-PGVLXXXXXXXXXXXXXA 386
TSSVCSGNG WR AE SASQD+ DLDDE GV A
Sbjct: 280 TSSVCSGNGDRRQLNWRDSHNN--QSAEWSASQDELDLDDELAGVHRRSAARSSKRSRTA 337
Query: 387 EVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGL 446
EVHNLSERRRRDRINEKMRALQELIPNCNKIDKASML+EAIEYLKTLQLQVQMMSMGTG+
Sbjct: 338 EVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSMGTGM 397
Query: 447 CIPPMLLPTAMQHLQIP---------PM---AHFPHLGMGLGYGMGVFDMSNTGALQMPP 494
+PPM+LP A +Q PM AHFPHLG G+ F M
Sbjct: 398 FVPPMMLPAAAAAMQHHHMQMQQMAGPMAAAAHFPHLGAAAAMGLAGFGMPA-------- 449
Query: 495 MPGAHFPCPMIPGA 508
A FPCPM P A
Sbjct: 450 --AAQFPCPMFPAA 461
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 4/81 (4%)
Query: 386 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
AEVHNLSERRRRDRINEKMRALQELIP+CNK DKAS+LDEAIEYLK+LQ+QVQ+M M TG
Sbjct: 222 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG 281
Query: 446 LCIPPMLLPTAMQHLQIPPMA 466
+ PM+ P A Q + PPMA
Sbjct: 282 MA--PMMFPGAHQFM--PPMA 298
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 3/89 (3%)
Query: 386 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
AEVHNLSERRRRDRINEKM+ALQELIP+CNK DKASMLDEAIEYLK+LQLQ+QMM MG G
Sbjct: 271 AEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGG 330
Query: 446 LCIPPMLLPTAMQHLQIPPMAHFPHLGMG 474
+ P ++ P A H + M +GMG
Sbjct: 331 MAPPAVMFPAAGVHQYMQRMG---AVGMG 356
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 84/135 (62%), Gaps = 24/135 (17%)
Query: 386 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
AEVHNLSERRRRDRINEK+RALQEL+P+CNK DKAS+LDEAIEYLK+LQ+QVQ+M M TG
Sbjct: 231 AEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG 290
Query: 446 LCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGM--------------GVFDMSNTGALQ 491
I PM+ P H +PPM GMGL + M+N+ Q
Sbjct: 291 --IVPMMFPGT--HQLMPPM------GMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQ 340
Query: 492 MPPMPGAHFPCPMIP 506
MP +P P +P
Sbjct: 341 MPQIPSPAMNAPSVP 355
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 87/148 (58%), Gaps = 18/148 (12%)
Query: 386 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
AEVHNLSE+RRR +INEKM+ALQ LIPN NK DKASMLDEAIEYLK LQLQVQM+SM G
Sbjct: 28 AEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNG 87
Query: 446 LCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGMGVFDMSNTGALQMPPM---PGAHF-- 500
+ + P L A++ Q M F LG G + V MPP+ GAH
Sbjct: 88 VYLNPSYLSGALEPAQASQM--FAALG---GNNVTVVHPGTV----MPPVNQSSGAHHLF 138
Query: 501 -PCPMIPGASPQGLGIPGTSTMPMFGVP 527
P P PQ L +P ++P +P
Sbjct: 139 DPLNSPPQNQPQSLILP---SVPSTAIP 163
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 10/88 (11%)
Query: 386 AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
AE HN SERRRRDRINEK++ALQEL+PNC K DK SMLDEAI+YLK+LQLQ+QM+ MG G
Sbjct: 15 AEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKG 74
Query: 446 LCIPPMLLPTAMQHL--------QIPPM 465
+ P++ P Q++ QIPP+
Sbjct: 75 MA--PVVPPELQQYMHYITADPSQIPPI 100
>Os06g0184000
Length = 430
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 48/54 (88%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM 442
H+++ER RR+RI E+M++LQEL+PN NK DKASMLDE I+Y+K LQLQV+++SM
Sbjct: 225 HSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 278
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 48/54 (88%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM 442
H+++ER RR+RI E+MRALQEL+PN NK D+A+MLDE ++Y+K L+LQV+++SM
Sbjct: 144 HSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSM 197
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGLCI 448
H+++ER RR++I+E+M+ LQ L+PN NK DKASMLDE I+Y+K LQLQV+++SM + L
Sbjct: 327 HSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSM-SRLGA 385
Query: 449 PPMLLP 454
P +LP
Sbjct: 386 PGAVLP 391
>Os02g0795800
Length = 463
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 396 RRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM 442
RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+++SM
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 298
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%), Gaps = 4/63 (6%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNKI---DKASMLDEAIEYLKTLQLQVQMMSMGTG 445
H+++ER RR+RI E+M+ALQEL+PN NK+ DKASMLDE I+Y+K LQLQV+ S T
Sbjct: 261 HSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVK-ASTYTK 319
Query: 446 LCI 448
L I
Sbjct: 320 LLI 322
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNKID-KASMLDEAIEYLKTLQLQVQMMSM 442
H+L+ER RR+RI+E+MR LQEL+P CNK+ KA MLDE I Y+++LQ QV+ +SM
Sbjct: 175 HSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSM 229
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQMMSMGTGLC 447
H+L+ER RR+RI+++M+ LQ+L+P CNK I KA MLDE I Y+++LQ QV+ +SM
Sbjct: 215 HSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATV 274
Query: 448 IPPML--LPTAMQ 458
P LPT +Q
Sbjct: 275 NPLDFSNLPTLLQ 287
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 7/82 (8%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNKID-KASMLDEAIEYLKTLQLQVQMMSMGTGLC 447
H+L+ER RR+RI+E+M+ LQ L+P CNKI KA MLDE I Y+++LQ QV+ +SM
Sbjct: 92 HSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEFLSMKLATM 151
Query: 448 IPPM-----LLPTA-MQHLQIP 463
P + +P+ M H+ +P
Sbjct: 152 NPQLDFDSHYMPSKDMSHMPVP 173
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 11/93 (11%)
Query: 387 EVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQMMSMGTG 445
+ H+L+ER RR++I+++M+ LQ+L+P CNK + KA MLDE I Y+++LQ QV+ +SM
Sbjct: 286 DSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLA 345
Query: 446 LCIP-------PMLLPTAMQHLQIPPM--AHFP 469
P P LL M H P+ +HFP
Sbjct: 346 TVNPQLDFNNLPNLLAKDM-HQSCSPLQSSHFP 377
>Os10g0556200 Similar to SPATULA
Length = 191
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 39/45 (86%)
Query: 395 RRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQM 439
+RRDRIN+KM+ LQ+L+PN +K DKASMLDE I+YLK LQ QVQ+
Sbjct: 12 KRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV 56
>Os11g0634700
Length = 246
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 48/65 (73%)
Query: 387 EVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGL 446
+ +L +RRR+RINE++R LQ+L+PN K+D ++ML+EA++Y+K LQLQ++++S
Sbjct: 164 DTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTW 223
Query: 447 CIPPM 451
P+
Sbjct: 224 MFAPL 228
>Os03g0802900 Similar to MYC1
Length = 265
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Query: 389 HNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQMMSM 442
H+L+ER RR++I+E+M+ LQ+L+P CNK I KAS+LDE I Y++ LQ QV+ +SM
Sbjct: 147 HSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 201
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 328 ATSSVCSGNGAGSDELWRQQKRKCQA---QAECSASQD-DDLDDEPGVLXXXXXXXXXXX 383
+ SS G E+ QQ+R Q CS Q +D D G
Sbjct: 93 SASSRIQNVGDQQTEVSSQQERISMEEDNQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRG 152
Query: 384 XXAEVHNLSERRRRDRINEKMRALQELIPNCNKID-KASMLDEAIEYLKTLQLQVQMMSM 442
H+L+ER RR +I+E+M+ LQ+L+P C+KI KA MLDE I Y+++LQ QV+ +SM
Sbjct: 153 QATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM 212
Query: 443 GTGLCIPPM 451
P +
Sbjct: 213 KLATVNPEL 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,377,327
Number of extensions: 918392
Number of successful extensions: 2688
Number of sequences better than 1.0e-10: 21
Number of HSP's gapped: 2697
Number of HSP's successfully gapped: 21
Length of query: 637
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 530
Effective length of database: 11,448,903
Effective search space: 6067918590
Effective search space used: 6067918590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)