FiT-DB / Search/ Help/ Sample detail
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Os04g0618600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.98 | 0.613 | 5.85 | -2.93 | 1.14 | -1.17 | 0.57 | -3.51 | -0.464 | 4.97 | 21.1 | 5407 | -- | -- |
| 183.46 | 0.631 | 5.71 | -2.49 | 1.15 | -0.662 | 0.437 | -- | -0.334 | 4.91 | 24.7 | 4071 | -- | -- |
| 168.88 | 0.605 | 5.86 | -2.84 | 1.14 | -1.25 | -- | -3.54 | -0.45 | 4.91 | 20.9 | 6710 | -- | -- |
| 183.24 | 0.63 | 5.71 | -2.41 | 1.15 | -0.655 | -- | -- | -0.319 | 4.94 | 24.7 | 3139 | -- | -- |
| 237.41 | 0.718 | 5.88 | -2.78 | -- | -1.27 | -- | -3.66 | -0.423 | -- | 20.76 | 6437 | -- | -- |
| 192.71 | 0.651 | 5.75 | -2.66 | 1.12 | -- | 0.631 | -- | -0.504 | 5.11 | -- | -- | -- | -- |
| 193.65 | 0.652 | 5.75 | -2.66 | 1.12 | -- | -- | -- | -0.507 | 4.99 | -- | -- | -- | -- |
| 203.99 | 0.665 | 5.7 | -2.27 | -- | -0.81 | -- | -- | -0.216 | -- | 26.4 | 276 | -- | -- |
| 204.99 | 0.667 | 5.56 | -- | 1.14 | -2.03 | -- | -- | 0.347 | 4.87 | 19.6 | 47520 | -- | -- |
| 260.11 | 0.754 | 5.76 | -2.62 | -- | -- | -- | -- | -0.479 | -- | -- | -- | -- | -- |
| 380.18 | 0.912 | 5.68 | -- | 1.08 | -- | -- | -- | -0.211 | 5.07 | -- | -- | -- | -- |
| 273.25 | 0.77 | 5.56 | -- | -- | -2.01 | -- | -- | 0.375 | -- | 19.33 | 46573 | -- | -- |
| 441.11 | 0.98 | 5.69 | -- | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.59 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 2 | 166.86 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 4 | 167.02 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 5 | 167.29 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 6 | 167.29 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 10 | 167.46 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 12 | 167.68 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 15 | 167.86 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 20 | 168.22 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 21 | 168.33 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 25 | 168.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 26 | 168.84 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 27 | 168.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 30 | 168.93 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 33 | 169.00 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 38 | 169.21 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 12 |
| 44 | 169.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 45 | 169.29 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 58 | 169.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 63 | 169.41 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 16 |
| 69 | 169.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 77 | 169.45 | temperature | 20 | 14400 | < th | dose dependent | sin | 4 | NA |
| 90 | 169.49 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 110 | 169.52 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 133 | 169.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 143 | 169.62 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 160 | 169.66 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 164 | 169.66 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 169 | 169.68 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 171 | 169.69 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 267 | 169.94 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 274 | 169.96 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 282 | 169.98 | temperature | 20 | 14400 | < th | dose dependent | rect. | 10 | 21 |
| 357 | 170.10 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 375 | 170.12 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 427 | 170.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 441 | 170.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 449 | 170.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 451 | 170.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 455 | 170.28 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 464 | 170.29 | radiation | 10 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 466 | 170.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 473 | 170.30 | radiation | 10 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 497 | 170.34 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 529 | 170.46 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 548 | 170.57 | wind | 3 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 554 | 170.59 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 14 |
| 563 | 170.63 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 568 | 170.64 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 10 |
| 591 | 170.72 | radiation | 30 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 647 | 170.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 659 | 170.87 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 674 | 170.90 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 695 | 170.99 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 731 | 171.11 | humidity | 60 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 773 | 171.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 801 | 171.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 803 | 171.36 | wind | 9 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 824 | 171.44 | humidity | 50 | 43200 | > th | dose independent | sin | 17 | NA |
| 874 | 171.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 880 | 171.63 | humidity | 90 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 891 | 171.67 | humidity | 50 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 918 | 171.72 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 961 | 171.86 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 963 | 171.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 964 | 171.87 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 965 | 171.87 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 999 | 171.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 22 |
