BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0618600 Os04g0618600|AK106689
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 342 1e-94
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 112 2e-25
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 106 7e-24
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 105 2e-23
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 101 4e-22
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 101 4e-22
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 90 7e-19
Os06g0184000 82 3e-16
Os02g0795800 73 1e-13
Os06g0193400 Similar to Helix-loop-helix protein homolog 73 1e-13
Os03g0797600 Similar to Helix-loop-helix protein homolog 72 3e-13
Os10g0556200 Similar to SPATULA 70 8e-13
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 69 2e-12
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 66 2e-11
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 342 bits (876), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA 76
FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA
Sbjct: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA 76
Query: 77 PVVPPELQQYMHYITADPSQIPPIRPSEPRPFQITHATQQRQSNVESDFLSQMQNLHPSE 136
PVVPPELQQYMHYITADPSQIPPIRPSEPRPFQITHATQQRQSNVESDFLSQMQNLHPSE
Sbjct: 77 PVVPPELQQYMHYITADPSQIPPIRPSEPRPFQITHATQQRQSNVESDFLSQMQNLHPSE 136
Query: 137 PPQNFLRPPKLQLYTPEQQRRGLASSSGHNSGWITERNSSYNFLE 181
PPQNFLRPPKLQLYTPEQQRRGLASSSGHNSGWITERNSSYNFLE
Sbjct: 137 PPQNFLRPPKLQLYTPEQQRRGLASSSGHNSGWITERNSSYNFLE 181
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 4/80 (5%)
Query: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA 76
HN SERRRRDRINEK+KALQEL+P+C KTDK SMLDEAI+YLKSLQLQLQM+ MG GMA
Sbjct: 273 VHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGMA 332
Query: 77 P--VVPPE--LQQYMHYITA 92
P V+ P + QYM + A
Sbjct: 333 PPAVMFPAAGVHQYMQRMGA 352
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%)
Query: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA 76
HN SERRRRDRINEK++ALQEL+P+C KTDK S+LDEAI+YLKSLQ+Q+Q++ M GMA
Sbjct: 224 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMA 283
Query: 77 PVVPPELQQYM 87
P++ P Q+M
Sbjct: 284 PMMFPGAHQFM 294
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 64/86 (74%), Gaps = 10/86 (11%)
Query: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA 76
HN SERRRRDRINEK++ALQEL+PNC K DK SMLDEAI+YLK+LQLQ+QM+ MG G+
Sbjct: 388 VHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGLC 447
Query: 77 --PVVPPELQQYMHYITADPSQIPPI 100
P++ P Q++ QIPP+
Sbjct: 448 IPPMLLPTAMQHL--------QIPPM 465
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%)
Query: 18 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMAP 77
HN SERRRRDRINEKL+ALQEL+P+C KTDK S+LDEAI+YLKSLQ+Q+Q++ M G+ P
Sbjct: 234 HNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVP 293
Query: 78 VVPPELQQYM 87
++ P Q M
Sbjct: 294 MMFPGTHQLM 303
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 52/59 (88%)
Query: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGM 75
HN SERRRRDRINEK++ALQEL+PNC K DK SML+EAI+YLK+LQLQ+QM+ MG GM
Sbjct: 339 VHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSMGTGM 397
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 48/59 (81%)
Query: 17 FHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGM 75
HN SE+RRR +INEK+KALQ L+PN KTDK SMLDEAI+YLK LQLQ+QML M G+
Sbjct: 30 VHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 88
>Os06g0184000
Length = 430
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 5/67 (7%)
Query: 18 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGK---- 73
H+ +ER RR+RI E++K+LQEL+PN KTDK SMLDE IDY+K LQLQ+++L M +
Sbjct: 225 HSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 284
Query: 74 -GMAPVV 79
GMAP+V
Sbjct: 285 AGMAPLV 291
>Os02g0795800
Length = 463
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 25 RRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGK-GMAPVVPP 81
RR+RI E++KALQEL+PN KTDK SMLDE IDY+K LQLQ+++L M + G A V P
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAP 309
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 18 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMAP 77
H+ +ER RR++I+E++K LQ L+PN K DK SMLDE IDY+K LQLQ+++L M + AP
Sbjct: 327 HSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAP 386
Query: 78 -VVPPELQQYMHYITADPS 95
V P L++ ++PS
Sbjct: 387 GAVLPLLRESQTECHSNPS 405
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 18 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGK-GMA 76
H+ +ER RR+RI E+++ALQEL+PN KTD+ +MLDE +DY+K L+LQ+++L M + G A
Sbjct: 144 HSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGA 203
Query: 77 PVV 79
V
Sbjct: 204 GAV 206
>Os10g0556200 Similar to SPATULA
Length = 191
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 39/45 (86%)
Query: 24 RRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQM 68
+RRDRIN+K+K LQ+L+PN +KTDK SMLDE IDYLK LQ Q+Q+
Sbjct: 12 KRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV 56
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
Query: 18 HNFSERRRRDRINEKLKALQELLPNCTK---TDKVSMLDEAIDYLKSLQLQLQ 67
H+ +ER RR+RI E++KALQEL+PN K TDK SMLDE IDY+K LQLQ++
Sbjct: 261 HSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVK 313
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 18 HNFSERRRRDRINEKLKALQELLPNCTK-TDKVSMLDEAIDYLKSLQLQLQMLVMGKGMA 76
H+ +ER RR+RI+E+++ LQEL+P C K T K MLDE I+Y++SLQ Q++ L M +
Sbjct: 175 HSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSMKIAAS 234
Query: 77 -PVV---------PPELQQYMHYITADPSQIPPIRPSEPRPFQITHATQQRQSNVESDFL 126
PVV +L Q A P+ P+ EP Q++ Q + S S +
Sbjct: 235 NPVVNFNIVEDLFGRQLSQAACNPAALPAMALPMAQVEPSCLQMSPLQQMQTSAGSSGYG 294
Query: 127 SQMQNLHPSEPPQNFLRPPKLQLYTPEQQRRGLASSSGHNSGW 169
+M + PP + P P G A GW
Sbjct: 295 LEMVVSNQYSPPGGPMSVPAGASVEPCLNVNGAA-------GW 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,145,911
Number of extensions: 263858
Number of successful extensions: 1184
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 14
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)