Os06g0193400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helix-loop-helix protein homolog.
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Os06g0193400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helix-loop-helix protein homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.36 | 0.33 | 10.7 | -0.556 | 0.561 | -0.954 | 0.381 | -1.83 | 0.05 | 22.5 | 1.457 | 4340 | -- | -- |
| 52.13 | 0.336 | 10.7 | -0.236 | 0.579 | -0.891 | 0.322 | -- | 0.0588 | 22.5 | 1.812 | 5798 | -- | -- |
| 49.84 | 0.329 | 10.7 | -0.56 | 0.559 | -0.947 | -- | -1.75 | 0.048 | 22.6 | 1.562 | 4354 | -- | -- |
| 52.56 | 0.338 | 10.7 | -0.2 | 0.575 | -0.964 | -- | -- | 0.125 | 22.7 | 1.751 | 5785 | -- | -- |
| 60.27 | 0.362 | 10.7 | -0.478 | -- | -1.26 | -- | -1.48 | 0.131 | -- | 1.83 | 5963 | -- | -- |
| 70.73 | 0.394 | 10.7 | -0.313 | 0.574 | -- | 0.445 | -- | -0.0739 | 22.3 | -- | -- | -- | -- |
| 71.5 | 0.396 | 10.7 | -0.331 | 0.571 | -- | -- | -- | -0.0756 | 22.5 | -- | -- | -- | -- |
| 63.35 | 0.371 | 10.6 | -0.151 | -- | -1.28 | -- | -- | 0.165 | -- | 1.81 | 5972 | -- | -- |
| 47.48 | 0.321 | 10.7 | -- | 0.592 | -0.96 | -- | -- | 0.132 | 22.7 | 1.749 | 15872 | -- | -- |
| 91.47 | 0.447 | 10.7 | -0.321 | -- | -- | -- | -- | -0.0733 | -- | -- | -- | -- | -- |
| 74.39 | 0.403 | 10.7 | -- | 0.569 | -- | -- | -- | -0.0388 | 22.4 | -- | -- | -- | -- |
| 63.86 | 0.372 | 10.6 | -- | -- | -1.31 | -- | -- | 0.169 | -- | 1.75 | 5966 | -- | -- |
| 94.19 | 0.453 | 10.7 | -- | -- | -- | -- | -- | -0.0377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.78 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 8 |
| 13 | 43.34 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 14 | 43.37 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 16 | 43.41 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 35 | 43.60 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 36 | 43.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 53 | 43.71 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 62 | 43.75 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 69 | 43.81 | humidity | 80.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 101 | 43.99 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 132 | 44.10 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 146 | 44.15 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 168 | 44.26 | humidity | 80.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 175 | 44.28 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 269 | 44.57 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 301 | 44.64 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 312 | 44.67 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 332 | 44.71 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 374 | 44.79 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 400 | 44.84 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 534 | 45.18 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 539 | 45.19 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 548 | 45.21 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 591 | 45.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 17 |
| 658 | 45.42 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 692 | 45.47 | humidity | 90.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 696 | 45.48 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 707 | 45.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 755 | 45.58 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 774 | 45.62 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 782 | 45.63 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 803 | 45.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 15 |
| 825 | 45.68 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 830 | 45.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 839 | 45.69 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 844 | 45.70 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 851 | 45.71 | humidity | 70.0 | 14400 | > th | dose dependent | no | NA | NA |
| 857 | 45.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 860 | 45.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 866 | 45.72 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 891 | 45.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 893 | 45.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 945 | 45.82 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |