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Os12g0610200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0317) R2 : 0.81
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.55 (0.0851) R2dC : 0.792 R2C : 0.539
β3 : 2.04 (0.0886) R2dE : 0.244 R2E : -0.00992
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.396 (0.067) R2dN8 : 0.019 R2N8 : 0.0284
σ : 0.596
deviance : 163.67
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_____
C
peak time of C : 4.18
E
wheather : humidity
threshold : 36.43
memory length : 54
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.5
open length of G : 17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.04 0.581 11.5 0.0519 3.4 2 -1.94 -1.58 0.387 4.28 43.42 67 4.33 16.9
158.95 0.587 11.5 0.0475 3.49 2.02 -1.28 -- 0.4 4.27 39.78 53 4.5 17
160.83 0.591 11.5 0.075 3.53 2.06 -- -0.886 0.397 4.18 38 54 4.5 17
163.58 0.596 11.5 0.0588 3.53 2.03 -- -- 0.405 4.21 37.42 54 4.5 17
406 0.938 11.3 0.152 -- 2.84 -- 0.367 0.932 -- 71.81 229 1.1 18
301.38 0.814 11.4 0.0453 3.19 -- -1.62 -- 0.525 5.3 -- -- -- --
307.84 0.822 11.4 0.0422 3.18 -- -- -- 0.532 5.26 -- -- -- --
329.11 0.845 11.4 -0.0171 -- 3.47 -- -- 0.842 -- 68.78 271 0.491 22.2
163.67 0.596 11.5 -- 3.55 2.04 -- -- 0.396 4.18 36.43 54 4.5 17
834.52 1.35 11.5 0.152 -- -- -- -- 0.612 -- -- -- -- --
307.89 0.821 11.4 -- 3.18 -- -- -- 0.527 5.26 -- -- -- --
328.59 0.844 11.4 -- -- 3.46 -- -- 0.808 -- 68.98 274 0.367 22.3
835.13 1.35 11.5 -- -- -- -- -- 0.595 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.60 humidity 50.0 90 > th dose dependent rect. 4 17
5 166.03 radiation 10.0 270 < th dose dependent rect. 3 16
6 168.99 humidity 50.0 10 > th dose dependent rect. 5 15
9 169.91 humidity 50.0 270 > th dose dependent rect. 2 17
22 171.97 radiation 30.0 90 < th dose dependent rect. 4 19
42 174.78 radiation 1.0 270 < th dose independent rect. 3 16
53 176.22 radiation 40.0 270 < th dose dependent rect. 15 16
54 176.42 temperature 10.0 270 > th dose dependent rect. 20 6
60 177.34 radiation 40.0 270 < th dose dependent rect. 2 8
75 178.61 radiation 20.0 270 < th dose dependent rect. 1 20
96 180.35 radiation 1.0 270 > th dose independent rect. 7 9
104 181.04 humidity 70.0 90 > th dose independent rect. 4 16
121 182.36 radiation 20.0 90 < th dose independent rect. 4 17
126 182.70 radiation 20.0 270 < th dose independent rect. 2 7
131 183.00 radiation 1.0 270 < th dose independent sin 1 NA
132 183.06 radiation 10.0 270 < th dose dependent sin 1 NA
140 183.29 humidity 70.0 10 > th dose independent rect. 5 16
154 183.78 radiation 30.0 270 < th dose independent rect. 15 16
156 183.82 radiation 40.0 90 < th dose dependent rect. 4 7
184 185.29 humidity 50.0 90 > th dose dependent rect. 4 7
192 185.57 radiation 40.0 90 < th dose dependent rect. 15 20
199 185.77 radiation 1.0 270 > th dose independent sin 1 NA
201 185.79 radiation 40.0 90 < th dose independent rect. 4 17
211 186.27 precipitation 0.1 270 < th dose independent rect. 9 16
213 186.27 precipitation 0.1 270 < th dose dependent rect. 9 16
252 188.38 humidity 70.0 270 > th dose independent rect. 1 8
260 188.70 humidity 50.0 270 > th dose dependent rect. 2 7
268 188.94 radiation 40.0 90 < th dose independent rect. 4 7
275 189.07 radiation 40.0 270 < th dose independent rect. 2 18
283 189.28 humidity 50.0 270 > th dose independent rect. 15 16
292 189.49 radiation 40.0 90 < th dose dependent rect. 13 22
295 189.57 radiation 20.0 270 < th dose independent rect. 2 17
303 189.78 temperature 30.0 270 < th dose independent rect. 1 8
305 189.79 precipitation 0.1 270 < th dose independent rect. 20 7
306 189.79 precipitation 0.1 270 < th dose dependent rect. 20 7
309 189.88 atmosphere 995.0 270 > th dose independent rect. 3 17
312 190.02 precipitation 0.1 270 < th dose independent rect. 8 18
313 190.02 precipitation 0.1 270 < th dose dependent rect. 8 18
325 190.31 wind 9.0 270 < th dose independent rect. 20 7
331 190.38 temperature 10.0 270 > th dose independent rect. 20 7
332 190.38 temperature 30.0 270 < th dose independent rect. 20 7
333 190.38 humidity 50.0 270 > th dose independent rect. 20 7
336 190.38 atmosphere 995.0 270 > th dose independent rect. 20 7
337 190.38 radiation 1.0 270 < th dose independent rect. 20 7
343 190.38 temperature 10.0 270 > th dose independent rect. 3 17
344 190.38 atmosphere 1015.0 270 < th dose independent rect. 3 17
345 190.38 radiation 1.0 270 < th dose dependent rect. 20 7
351 190.39 humidity 50.0 270 > th dose independent rect. 3 16
366 190.77 wind 9.0 270 < th dose independent rect. 1 8
367 190.77 temperature 10.0 270 > th dose independent rect. 1 8
370 190.77 atmosphere 995.0 270 > th dose independent rect. 1 8
371 190.77 atmosphere 1015.0 270 < th dose independent rect. 1 8
372 190.77 temperature 10.0 270 > th dose independent rect. 9 16
382 191.16 temperature 15.0 270 > th dose independent rect. 7 8
394 191.51 temperature 10.0 90 > th dose dependent rect. 9 19
396 191.55 atmosphere 995.0 270 > th dose independent rect. 15 16
402 191.65 wind 9.0 270 < th dose independent rect. 3 17
409 191.81 precipitation 0.1 270 < th dose independent rect. 7 8
410 191.81 precipitation 0.1 270 < th dose dependent rect. 7 8
419 192.01 radiation 20.0 90 < th dose dependent sin 23 NA
485 192.63 humidity 50.0 270 > th dose independent rect. 2 18
495 192.88 wind 9.0 270 < th dose independent rect. 9 16
508 193.13 precipitation 0.1 270 < th dose independent rect. 1 8
509 193.13 precipitation 0.1 270 < th dose dependent rect. 1 8
528 193.31 atmosphere 1015.0 270 < th dose independent rect. 7 8
529 193.31 temperature 10.0 270 > th dose independent rect. 15 16
542 193.49 wind 9.0 270 < th dose independent rect. 15 16
554 193.65 wind 9.0 270 < th dose independent rect. 7 8
597 194.50 wind 9.0 270 < th dose independent rect. 2 6
598 194.50 temperature 10.0 270 > th dose independent rect. 2 6
603 194.50 atmosphere 995.0 270 > th dose independent rect. 2 6
604 194.50 atmosphere 1015.0 270 < th dose independent rect. 2 6
605 194.50 temperature 10.0 270 > th dose independent rect. 8 18
637 195.21 temperature 10.0 270 > th dose dependent rect. 8 17
640 195.32 radiation 40.0 270 < th dose independent rect. 13 8
655 195.67 atmosphere 995.0 270 > th dose independent rect. 7 8
656 195.69 radiation 40.0 270 < th dose independent rect. 1 20
660 195.80 precipitation 0.1 270 < th dose independent rect. 2 6
661 195.80 precipitation 0.1 270 < th dose dependent rect. 2 6
671 195.96 wind 9.0 270 < th dose independent rect. 8 18
749 197.41 temperature 10.0 1440 > th dose independent rect. 22 7
752 197.41 temperature 30.0 1440 < th dose independent rect. 22 7
756 197.41 humidity 50.0 1440 > th dose independent rect. 22 7
763 197.41 atmosphere 995.0 1440 > th dose independent rect. 22 7
764 197.41 radiation 20.0 1440 < th dose independent rect. 22 7
776 197.41 temperature 10.0 1440 > th dose independent rect. 5 17
793 197.69 radiation 30.0 90 < th dose dependent rect. 3 23
810 197.88 precipitation 0.1 270 < th dose independent rect. 3 17
812 197.88 precipitation 0.1 270 < th dose dependent rect. 3 17
850 198.66 precipitation 0.1 270 < th dose independent rect. 21 16
852 198.66 precipitation 0.1 270 < th dose dependent rect. 21 16
888 199.33 radiation 10.0 90 > th dose independent sin 23 NA
910 199.68 humidity 50.0 90 > th dose dependent rect. 15 20
917 199.78 wind 1.0 270 > th dose independent rect. 20 7
1000 200.66 wind 9.0 90 < th dose dependent rect. 21 7