BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0610200 Os12g0610200|AK066763
(445 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 659 0.0
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 115 9e-26
Os03g0639300 Conserved hypothetical protein 115 1e-25
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 104 1e-22
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 102 5e-22
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 99 8e-21
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 96 7e-20
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 87 2e-17
Os06g0184000 80 3e-15
Os06g0193400 Similar to Helix-loop-helix protein homolog 73 5e-13
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 72 6e-13
Os03g0797600 Similar to Helix-loop-helix protein homolog 71 2e-12
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 69 6e-12
Os09g0501600 Similar to MYC1 66 4e-11
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/413 (81%), Positives = 335/413 (81%)
Query: 1 MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRKPPRPEKTTXXXXXXX 60
MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRKPPRPEKTT
Sbjct: 1 MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRKPPRPEKTTAAAAAAM 60
Query: 61 XEDESASWFQYPVDDVLEKDLFTELFGEMTXXXXXXXDVRRAACKEERGAVAAFQSRMMP 120
EDESASWFQYPVDDVLEKDLFTELFGEMT DVRRAACKEERGAVAAFQSRMMP
Sbjct: 61 AEDESASWFQYPVDDVLEKDLFTELFGEMTAAGGGGGDVRRAACKEERGAVAAFQSRMMP 120
Query: 121 PPWPARGKAEFGDVDDVCGVSEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPPV 180
PPWPARGKAEFGDVDDVCGVSEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPPV
Sbjct: 121 PPWPARGKAEFGDVDDVCGVSEVVMAKMDGAAAAETVGESSMLTIGSSICGSNHVQTPPV 180
Query: 181 GNGKXXXXXXXXXXXXXXXXXVASSSMRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMES 240
GNGK VASSSMRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMES
Sbjct: 181 GNGKAGAGTAGAARRAHDTATVASSSMRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMES 240
Query: 241 GSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCN 300
GSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCN
Sbjct: 241 GSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCN 300
Query: 301 KTDKASMLDEAIEYLKSXXXXXXXXXXXXXXXXXXXXXXXXXVHQYMQRMGAVGMGPPHM 360
KTDKASMLDEAIEYLKS VHQYMQRMGAVGMGPPHM
Sbjct: 301 KTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVMFPAAGVHQYMQRMGAVGMGPPHM 360
Query: 361 ASLXXXXXXXXXXXXXXXXXXXXXMADPYARCLAVDHLQPPPPMHYLQGMSFY 413
ASL MADPYARCLAVDHLQPPPPMHYLQGMSFY
Sbjct: 361 ASLPRMPPFMAPPPAAVQSSPVVSMADPYARCLAVDHLQPPPPMHYLQGMSFY 413
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 70/89 (78%), Gaps = 4/89 (4%)
Query: 229 KRKQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEK 288
KRK R +S S SED E E+ T S +++ + +R RAAEVHNLSERRRRDRINEK
Sbjct: 184 KRKGRE----DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEK 239
Query: 289 MKALQELIPHCNKTDKASMLDEAIEYLKS 317
M+ALQELIPHCNKTDKAS+LDEAIEYLKS
Sbjct: 240 MRALQELIPHCNKTDKASILDEAIEYLKS 268
>Os03g0639300 Conserved hypothetical protein
Length = 307
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 126/298 (42%), Gaps = 57/298 (19%)
Query: 1 MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRK--PPRPEKTTXXXXX 58
MNQFVPDW ++MGD LGEDD L+ELLWCNGHVVMQSQ + PPRP +
Sbjct: 1 MNQFVPDW--SNMGDASRTLGEDDNLIELLWCNGHVVMQSQNHHRKLPPRPPEKA--AAA 56
Query: 59 XXXEDESASWFQYPVDDVLEKDLFTELF---------GEMTXXXXXXXDVRRAACK---- 105
EDE+ WF + + D LEKD+F++LF D CK
Sbjct: 57 AVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAGPGAGADGEGKTCKGDAA 116
Query: 106 ---EERGAVAAFQS---RMMPPPWPARGKA------EFGDVDDVCG-VSEVVMAKMDGAA 152
EERG A +MPPP D D G +SE+V A+
Sbjct: 117 MAEEERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELVRARRSSGG 176
Query: 153 AAETVGE---------SSMLT-IGSSICGSNHVQT-------------PP--VGNGKXXX 187
AA E SSML+ IGSSICGSN VQ PP VG+
Sbjct: 177 AARRKAEAGGGGGGASSSMLSAIGSSICGSNQVQVQQRTASEPGRRGAPPSAVGSANAIP 236
Query: 188 XXXXXXXXXXXXXXVASSSMRSRSCTAKAEPRDVAAAGVGGKRKQRGGAAMESGSPSE 245
VASSS RS C + + +++R +S SPSE
Sbjct: 237 CGGRDHGHGHEATTVASSSGRSNCCFGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSE 294
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 55/60 (91%)
Query: 258 PAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKS 317
P+++ +R RAAEVHNLSERRRRDRINEK++ALQEL+PHCNKTDKAS+LDEAIEYLKS
Sbjct: 218 PSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKS 277
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 51/56 (91%)
Query: 262 TTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKS 317
T + KR R AEVHNLSERRRRDRINEKM+ALQELIP+CNK DKASMLDEAIEYLK+
Sbjct: 377 TRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKT 432
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 51/54 (94%)
Query: 264 TAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKS 317
++KR R AEVHNLSERRRRDRINEKM+ALQELIP+CNK DKASML+EAIEYLK+
Sbjct: 330 SSKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKT 383
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 48/52 (92%)
Query: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLK 316
+KR RAAEVHNLSE+RRR +INEKMKALQ LIP+ NKTDKASMLDEAIEYLK
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLK 73
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 43/47 (91%)
Query: 271 AEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKS 317
AE HN SERRRRDRINEK+KALQEL+P+C KTDK SMLDEAI+YLKS
Sbjct: 15 AEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKS 61
>Os06g0184000
Length = 430
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 234 GGAAMESGSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQ 293
GG A G+ V T P Q+ A+R +A + H+++ER RR+RI E+MK+LQ
Sbjct: 187 GGPAASGGT--APVTSSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQ 244
Query: 294 ELIPHCNKTDKASMLDEAIEYLK 316
EL+P+ NKTDKASMLDE I+Y+K
Sbjct: 245 ELVPNANKTDKASMLDEIIDYVK 267
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 244 SEDVEFE--SAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK 301
S DVE + SA + A+ T A+R +A + H+++ER RR++I+E+MK LQ L+P+ NK
Sbjct: 295 SSDVEPQANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK 354
Query: 302 TDKASMLDEAIEYLK 316
DKASMLDE I+Y+K
Sbjct: 355 ADKASMLDEIIDYVK 369
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 222 AAAGVGGKRKQRGGAAMESGSPSEDVEFESAAATCSPAQKT----TTAKRRRAAEVHNLS 277
AA G G + R GA ++ S ++A+T + QKT A+R +A + H+L+
Sbjct: 119 AAVGKGRPERARPGAKKKAEVASPKDSPATSASTVTAGQKTDYIHVRARRGQATDSHSLA 178
Query: 278 ERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAIEYLKS 317
ER RR+RI+E+M+ LQEL+P CNK T KA MLDE I Y++S
Sbjct: 179 ERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQS 219
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 45/52 (86%)
Query: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLK 316
A+R +A + H+++ER RR+RI E+M+ALQEL+P+ NKTD+A+MLDE ++Y+K
Sbjct: 135 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVK 186
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%), Gaps = 3/55 (5%)
Query: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK---TDKASMLDEAIEYLK 316
A+R +A + H+++ER RR+RI E+MKALQEL+P+ NK TDKASMLDE I+Y+K
Sbjct: 252 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVK 306
>Os09g0501600 Similar to MYC1
Length = 366
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 12/112 (10%)
Query: 209 SRSCTAKAEPR--DVAAAGVGGKRKQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAK 266
S+ C A+ P+ + A+ G G R Q+ G S P AA A+
Sbjct: 127 SKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKP---------AAEPPKDYVHVRAR 177
Query: 267 RRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAIEYLKS 317
R +A + H+L+ER RR++I+++MK LQ+L+P CNK KA MLDE I Y++S
Sbjct: 178 RGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQS 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,579,720
Number of extensions: 507594
Number of successful extensions: 2630
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 17
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)