Os09g0501600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYC1.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0501600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to MYC1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.85 | 0.714 | 10.8 | -5.06 | 1.1 | 2.24 | -0.0081 | -7.6 | -0.696 | 1.75 | 27.4 | 1192 | -- | -- |
| 238.34 | 0.719 | 10.6 | -3.47 | 1.08 | 1.58 | -0.223 | -- | -0.497 | 1.99 | 26.19 | 1111 | -- | -- |
| 230.71 | 0.707 | 10.8 | -5.05 | 1.1 | 2.24 | -- | -7.38 | -0.737 | 1.73 | 27.1 | 1189 | -- | -- |
| 238.43 | 0.719 | 10.6 | -3.46 | 1.08 | 1.53 | -- | -- | -0.5 | 1.84 | 26.33 | 1132 | -- | -- |
| 291.26 | 0.795 | 10.8 | -4.78 | -- | 2.51 | -- | -5.19 | -0.985 | -- | 24.7 | 1103 | -- | -- |
| 321.02 | 0.84 | 10.6 | -3.01 | 1.36 | -- | 0.161 | -- | -0.452 | 1.46 | -- | -- | -- | -- |
| 321.13 | 0.839 | 10.6 | -3.02 | 1.36 | -- | -- | -- | -0.453 | 1.47 | -- | -- | -- | -- |
| 300.18 | 0.807 | 10.6 | -3.56 | -- | 2.03 | -- | -- | -0.668 | -- | 24.58 | 1090 | -- | -- |
| 529.71 | 1.07 | 10.5 | -- | 1.13 | 0.904 | -- | -- | 0.0669 | 1.63 | 32.24 | 1034 | -- | -- |
| 434.83 | 0.974 | 10.6 | -2.97 | -- | -- | -- | -- | -0.423 | -- | -- | -- | -- | -- |
| 561.51 | 1.11 | 10.5 | -- | 1.31 | -- | -- | -- | -0.116 | 1.39 | -- | -- | -- | -- |
| 609.46 | 1.15 | 10.5 | -- | -- | 1.14 | -- | -- | -0.00084 | -- | 27.9 | 1122 | -- | -- |
| 666.88 | 1.21 | 10.5 | -- | -- | -- | -- | -- | -0.0943 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 3 | 227.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 227.71 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 6 | 227.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 8 | 227.78 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 15 | 227.91 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 17 | 227.92 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 19 | 227.94 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 23 | 227.98 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 34 | 228.15 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 47 | 228.26 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 50 | 228.31 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 59 | 228.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 73 | 228.55 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 84 | 228.60 | wind | 7 | 43200 | > th | dose dependent | sin | 0 | NA |
| 86 | 228.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 88 | 228.62 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 101 | 228.72 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 108 | 228.79 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 115 | 228.82 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 162 | 229.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 171 | 229.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 198 | 229.34 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 206 | 229.39 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 217 | 229.45 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 228 | 229.51 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 255 | 229.64 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 275 | 229.74 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 18 |
| 306 | 230.01 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 373 | 230.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 379 | 231.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 389 | 231.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 414 | 231.63 | wind | 9 | 43200 | < th | dose independent | sin | 0 | NA |
| 429 | 231.92 | wind | 9 | 43200 | > th | dose independent | sin | 23 | NA |
| 460 | 232.39 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 475 | 232.63 | wind | 9 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 476 | 232.66 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 534 | 233.11 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 601 | 233.64 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 602 | 233.64 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 632 | 233.77 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 644 | 233.84 | wind | 9 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 908 | 235.56 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 970 | 235.84 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |