BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0501600 Os09g0501600|AK059036
(366 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0501600 Similar to MYC1 604 e-173
Os08g0524800 Similar to TA1 protein (Fragment) 311 7e-85
Os01g0915600 Similar to TA1 protein (Fragment) 245 5e-65
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 175 6e-44
Os06g0275600 Similar to TA1 protein (Fragment) 174 1e-43
Os09g0474100 Similar to TA1 protein (Fragment) 162 4e-40
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 153 2e-37
Os08g0536800 Similar to TA1 protein (Fragment) 150 1e-36
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 150 2e-36
Os05g0103000 Similar to MYC1 147 9e-36
Os03g0802900 Similar to MYC1 146 2e-35
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 145 4e-35
Os08g0487700 Similar to TA1 protein (Fragment) 144 9e-35
Os06g0184000 95 1e-19
Os03g0797600 Similar to Helix-loop-helix protein homolog 94 2e-19
Os06g0193400 Similar to Helix-loop-helix protein homolog 92 4e-19
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 89 6e-18
Os06g0613500 Similar to Helix-loop-helix protein homolog 87 3e-17
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 78 1e-14
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 75 6e-14
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 72 5e-13
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 71 2e-12
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 71 2e-12
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 70 3e-12
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 69 4e-12
Os02g0795800 66 4e-11
>Os09g0501600 Similar to MYC1
Length = 366
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 301/366 (82%), Positives = 301/366 (82%)
Query: 1 MDSDYVXXXXXXXXXXXXXXXXXXXXXXXFLETLCGGPGFAERXXXXXXXXXXXXXXXXX 60
MDSDYV FLETLCGGPGFAER
Sbjct: 1 MDSDYVAGLLMSAAAAGLDLGVLDGGGGAFLETLCGGPGFAERAARLCGGGAGLFGLPAV 60
Query: 61 XNAERGGCSREGSSVSDPAWAHATGGGGDNXXXXXXXXXXXXXXXXXXXXXXXXSPCEVG 120
NAERGGCSREGSSVSDPAWAHATGGGGDN SPCEVG
Sbjct: 61 GNAERGGCSREGSSVSDPAWAHATGGGGDNARKRKAPASAAAGKDKDAVVGGGSSPCEVG 120
Query: 121 EAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQ 180
EAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQ
Sbjct: 121 EAKAPDSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQ 180
Query: 181 ATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMK 240
ATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMK
Sbjct: 181 ATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMK 240
Query: 241 LATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAME 300
LATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAME
Sbjct: 241 LATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAME 300
Query: 301 NQCSLDLANTALPHTGSTQYAFQKQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGQLQAAD 360
NQCSLDLANTALPHTGSTQYAFQKQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGQLQAAD
Sbjct: 301 NQCSLDLANTALPHTGSTQYAFQKQQRDLWEDNTFQYNDEQSQEDAVSAPNFDGQLQAAD 360
Query: 361 HTEIEF 366
HTEIEF
Sbjct: 361 HTEIEF 366
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 190/371 (51%), Positives = 218/371 (58%), Gaps = 45/371 (12%)
Query: 31 LETLCGGPGFAERXXXXXXXXXXXXXXXXXXNAE---------------RGGCSREGSSV 75
L+ LCG PGFAER GG SRE SSV
Sbjct: 45 LDKLCGDPGFAERAARLSSFNNGGGGVGQRYGGAGAGLFGMPPPAPGDFAGGGSREASSV 104
Query: 76 SDPAWAHATGGGGDNXXXXXXXXXXXXXXXXXXXXXXXXSPCEVGEAKAPDSKKCK---- 131
SDPA + + VGE K D K+CK
Sbjct: 105 SDPASSAMKDAAANAKKRKSTAAAAAAAKGKGKEP-------PVGEEKESDGKRCKTGNG 157
Query: 132 ---AEVNPKVEEAASDGSVGDRVQKQGKGKN--SSKPAAEPPKDYVHVRARRGQATDSHS 186
+ V PK E+A SD SV D K ++KP EPPKDYVHVRARRGQATDSHS
Sbjct: 158 EKESSVKPKAEQAGSDSSVEDGGGGGQKQGKGKNAKPV-EPPKDYVHVRARRGQATDSHS 216
Query: 187 LAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNP 246
LAERVRRE+ISQRMKVLQDLVPGCNKV+GKALMLDEIINYVQSLQ+QVEFLSMKLATVNP
Sbjct: 217 LAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNP 276
Query: 247 QLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLGAMENQCSLD 306
LDF NL TLLQKDMFQ+CGPS +SVF LES+ +AF F +Q D FQ F +ME+QC+L+
Sbjct: 277 -LDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFRFAEQGDVFQQFAQNSMESQCTLN 335
Query: 307 LANTALPH-TGSTQYAFQK-------QQRDLWEDN---TFQYNDEQSQEDAVSAPNFDGQ 355
+ AL T + QYAFQ QQR+ WED+ F + QSQE+ VSAPNF GQ
Sbjct: 336 QLDLALSQATNAAQYAFQDGTAGANLQQRNFWEDDLQSVFHIENGQSQENGVSAPNFHGQ 395
Query: 356 LQAADHTEIEF 366
QA H ++EF
Sbjct: 396 QQAG-HMKMEF 405
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 151/320 (47%), Positives = 183/320 (57%), Gaps = 27/320 (8%)
Query: 67 GCSREGSSVSDPAWAHATGGGGDNXXXXXXXXXXXXXXXXXXXXXXXXSPCEVGEAKAPD 126
G +R+ SSVSDPA GG SP AK
Sbjct: 169 GNTRDESSVSDPAP------GGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDS 222
Query: 127 S-KKCKA--EVNPKVEEAASDGSVGDRVQKQG----KGKNSSKPAAEPPKDYVHVRARRG 179
S K+CK+ E N EE + G + G +GK+SS EPPKDY+HVRARRG
Sbjct: 223 SGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRG 282
Query: 180 QATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 239
+ATDSHSLAERVRREKISQRMK+LQDLVPGCNKVVGKA+MLDEIINYVQSLQ+QVEFLSM
Sbjct: 283 EATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 342
Query: 240 KLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLG-- 297
KLATVNPQLDF NL LL KDM QSC P +S FPLE++G P+ +Q G G
Sbjct: 343 KLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLT 402
Query: 298 -AMENQCSLDLANTALPHTGSTQYAFQKQQRD-------LWEDN---TFQYNDEQSQEDA 346
M+NQ S+ + A + + F D W+D+ Q + QSQE A
Sbjct: 403 NGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIA 462
Query: 347 VSAPNFDGQLQAADHTEIEF 366
S+ +++G LQ H ++E
Sbjct: 463 TSSNSYNGSLQTV-HMKMEL 481
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 105/145 (72%), Gaps = 13/145 (8%)
Query: 166 EPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIIN 225
EP KDY+HVRARRGQATDSHSLAERVRRE+IS+RMK+LQ LVPGCNK+ GKALMLDEIIN
Sbjct: 73 EPAKDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIIN 132
Query: 226 YVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDM-------FQSCGPSVNSVFPLE-S 277
YVQSLQ+QVEFLSMKLAT+NPQLDF + + KDM + S P+ + F S
Sbjct: 133 YVQSLQRQVEFLSMKLATMNPQLDFDS-HYMPSKDMSHMPVPAYPSSDPTTTTAFSYTGS 191
Query: 278 AGTAFPF----CDQADFFQSFGLGA 298
TA PF C + D + +GA
Sbjct: 192 PATADPFTVYNCWELDLHTAMQMGA 216
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 104/138 (75%), Gaps = 10/138 (7%)
Query: 136 PKVEEAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREK 195
PK AS S G +++ A P +DY+HVRARRGQAT+SHSLAERVRREK
Sbjct: 231 PKRSSVASGKSSGKQIKDN---------AGSPKEDYIHVRARRGQATNSHSLAERVRREK 281
Query: 196 ISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLST 255
IS+RMK LQDLVPGC+KV GKA+MLDEIINYVQSLQ+QVEFLSMKLA+VNP LDF N+
Sbjct: 282 ISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDF-NIER 340
Query: 256 LLQKDMFQSCGPSVNSVF 273
+L KD+FQ G + +S F
Sbjct: 341 ILSKDIFQCRGTTASSAF 358
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/104 (73%), Positives = 92/104 (88%), Gaps = 1/104 (0%)
Query: 169 KDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQ 228
++Y+HVRARRGQAT+SHSLAER+RREKIS+RMK+LQDLVPGC+KV GKA+MLDEIINYVQ
Sbjct: 243 EEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQ 302
Query: 229 SLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSV 272
SLQ+QVEFLSMKLATVNP+LD N+ LL KD+ + G +S+
Sbjct: 303 SLQRQVEFLSMKLATVNPRLDL-NIEGLLSKDLLRFPGVPSSSI 345
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 87/96 (90%), Gaps = 1/96 (1%)
Query: 169 KDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQ 228
+DYVHVRA+RGQAT+SHSLAER+RR+KIS+RMK+LQDLVPGC+K+ GKA+MLDEIINYVQ
Sbjct: 142 EDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQ 201
Query: 229 SLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQS 264
SLQ+QVEFLSMKLATVNP+L F ++ +L K M S
Sbjct: 202 SLQRQVEFLSMKLATVNPELSF-DIEQILSKQMMLS 236
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 96/130 (73%), Gaps = 14/130 (10%)
Query: 126 DSKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKPAAE-------PPKDYVHVRARR 178
D K+ AE + +++ DG K +GK +SK E PPK Y+HVRARR
Sbjct: 93 DRKRKAAEDSAHSKDSCKDG-------KSRRGKKASKEVEEKSTTEDEPPKGYIHVRARR 145
Query: 179 GQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLS 238
GQATDSHSLAERVRRE+IS+RM++LQ LVPGC+KV GKAL+LDEIINYVQSLQ QVEFLS
Sbjct: 146 GQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLS 205
Query: 239 MKLATVNPQL 248
M++A+++P L
Sbjct: 206 MRIASMSPVL 215
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 90/126 (71%), Gaps = 2/126 (1%)
Query: 170 DYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQS 229
DY+HVRARRGQATDSHSLAERVRRE+IS+RM+ LQ+LVPGCNKV GKA MLDEIINYVQS
Sbjct: 160 DYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQS 219
Query: 230 LQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQ-SCGPSVNSVFPLESAGTAFPFCDQA 288
LQ+QVEFLSMK+A NP ++F + L + + Q +C P+ L A P C Q
Sbjct: 220 LQKQVEFLSMKIAASNPVVNFNIVEDLFGRQLSQAACNPAALPAMALPMAQVE-PSCLQM 278
Query: 289 DFFQSF 294
Q
Sbjct: 279 SPLQQM 284
>Os05g0103000 Similar to MYC1
Length = 339
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 99/144 (68%), Gaps = 8/144 (5%)
Query: 116 PCEVGEAKAPDSKKCKAEVNPK-------VEEAASDGSVGDRVQKQGKGKNSSKPAAEPP 168
PC +G + D+ K+ + + +EE + V + K K EPP
Sbjct: 115 PCSLGSTQDMDASWGKSRKHKRSNVGLKGLEEKKARRVVLHQHDDDVKKKAKEAAGGEPP 174
Query: 169 KDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQ 228
Y+HVRARRGQATDSHSLAERVRREKIS+RMK+LQ LVPGC+KV GKALMLDEII+YVQ
Sbjct: 175 AGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQ 234
Query: 229 SLQQQVEFLSMKLATVNPQL-DFG 251
SLQ QVEFLSMKLA+++P + +FG
Sbjct: 235 SLQNQVEFLSMKLASLSPLMYEFG 258
>Os03g0802900 Similar to MYC1
Length = 265
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 169 KDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQ 228
+DY+HVRARRGQATDSHSLAER RREKIS+RMK+LQDLVPGCNKV+GKA +LDEIINY+Q
Sbjct: 131 QDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQ 190
Query: 229 SLQQQVEFLSMKLATVNPQLDFG 251
+LQ+QVEFLSMKL VN ++ G
Sbjct: 191 ALQRQVEFLSMKLEAVNAHVNNG 213
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 96/131 (73%), Gaps = 10/131 (7%)
Query: 124 APDSKKCKAEVNPKVEEAASDGSVGDRVQKQ------GKGKNSSKPAAEPPKDYVHVRAR 177
+P KK K P+ E+ AS S + K+ GK + + E P+ ++HVRAR
Sbjct: 55 SPQDKKRK----PREEDTASLNSAHSKEAKENGRKRGGKKHSRDQMEEEAPQGFIHVRAR 110
Query: 178 RGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFL 237
RGQATDSHSLAERVRRE+IS+RM++LQ LVPGC+KV GKAL+LDEIINYVQSLQ QVEFL
Sbjct: 111 RGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFL 170
Query: 238 SMKLATVNPQL 248
SM++A+++P L
Sbjct: 171 SMRIASLSPVL 181
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 76/80 (95%)
Query: 171 YVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSL 230
Y HVRAR+GQAT++HSLAER+RREKIS+RMK+LQDLVPGC+KV GKALMLDEIINYVQSL
Sbjct: 173 YSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSL 232
Query: 231 QQQVEFLSMKLATVNPQLDF 250
Q+QVEFLSMKL+ VNP++D
Sbjct: 233 QRQVEFLSMKLSAVNPRIDL 252
>Os06g0184000
Length = 430
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 167 PPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINY 226
PP+ VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDEII+Y
Sbjct: 208 PPRQQ-RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANK-TDKASMLDEIIDY 265
Query: 227 VQSLQQQVEFLSM 239
V+ LQ QV+ LSM
Sbjct: 266 VKFLQLQVKVLSM 278
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 5/87 (5%)
Query: 153 KQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNK 212
KQG +P A PK VRARRGQATD HS+AER+RRE+I++RM+ LQ+LVP NK
Sbjct: 116 KQGGAAVGPQPPAPRPK----VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNK 171
Query: 213 VVGKALMLDEIINYVQSLQQQVEFLSM 239
+A MLDEI++YV+ L+ QV+ LSM
Sbjct: 172 -TDRAAMLDEILDYVKFLRLQVKVLSM 197
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 174 VRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQ 233
RARRGQATD HS+AER+RREKIS+RMK LQ LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQLQ 374
Query: 234 VEFLSM 239
V+ LSM
Sbjct: 375 VKVLSM 380
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
Query: 174 VRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVV--GKALMLDEIINYVQSLQ 231
VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK++ KA MLDEII+YV+ LQ
Sbjct: 250 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
Query: 232 QQVE 235
QV+
Sbjct: 310 LQVK 313
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%), Gaps = 4/67 (5%)
Query: 200 MKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQK 259
M++L++LVPGC+KV G AL+LDEIIN+VQSLQ+QVE+LSM+LA VNP++DFG L L
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
Query: 260 DMFQSCG 266
+ CG
Sbjct: 61 E----CG 63
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 127 SKKCKAEVNPKVEEAASDGSVGDRVQKQGKGKNSSKP---------AAEPPKDYVHVRAR 177
S+ C A+ P+ + A+ G G R Q+ G S P AA A+
Sbjct: 209 SRSCTAKAEPR--DVAAAGVGGKRKQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAK 266
Query: 178 RGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFL 237
R +A + H+L+ER RR++I+++MK LQ+L+P CNK KA MLDE I Y++SLQ Q++ +
Sbjct: 267 RRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQMM 325
Query: 238 SMKLATVNPQLDF 250
M P + F
Sbjct: 326 WMGGGMAPPAVMF 338
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 176 ARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVE 235
++R +A + H+L+E+ RR KI+++MK LQ L+P NK KA MLDE I Y++ LQ QV+
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 80
Query: 236 FLSMKLAT-VNPQLDFGNLSTLLQKDMFQSC-GPSVNSVFPLESAGTAFPFCDQAD 289
LSM+ +NP G L MF + G +V V P GT P +Q+
Sbjct: 81 MLSMRNGVYLNPSYLSGALEPAQASQMFAALGGNNVTVVHP----GTVMPPVNQSS 132
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 177 RRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEF 236
+R + + H+L+ER RR++I+++M+ LQ+L+P CNK + KA MLDE I Y+++LQ QV+
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQM 439
Query: 237 LSMKLATVNPQL 248
+SM P +
Sbjct: 440 MSMGTGLCIPPM 451
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 53/73 (72%), Gaps = 6/73 (8%)
Query: 172 VHVRA-----RRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINY 226
VH R+ +R + + H+L+ER RR++I+++M+ LQ+L+P CNK + KA ML+E I Y
Sbjct: 322 VHRRSAARSSKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLEEAIEY 380
Query: 227 VQSLQQQVEFLSM 239
+++LQ QV+ +SM
Sbjct: 381 LKTLQLQVQMMSM 393
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 177 RRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEF 236
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA +LDE I Y++SLQ QV+
Sbjct: 217 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQI 275
Query: 237 LSM 239
+ M
Sbjct: 276 MWM 278
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 174 VRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQ 233
+RA+RG AT S+AERVRR +IS+R++ LQ+LVP K A MLD ++Y++ LQ+Q
Sbjct: 319 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQ 378
Query: 234 VEFL 237
V+ L
Sbjct: 379 VKVL 382
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 11/87 (12%)
Query: 158 KNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKA 217
+ S +PAA+ RR +A + H+L+ER RR++I+++++ LQ+LVP CNK KA
Sbjct: 217 RPSKRPAAK----------RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNK-TDKA 265
Query: 218 LMLDEIINYVQSLQQQVEFLSMKLATV 244
+LDE I Y++SLQ QV+ + M V
Sbjct: 266 SILDEAIEYLKSLQMQVQIMWMTTGIV 292
>Os02g0795800
Length = 463
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 23/80 (28%)
Query: 182 TDSHSLAERV----------------------RREKISQRMKVLQDLVPGCNKVVGKALM 219
TD HS+AERV RRE+I++RMK LQ+LVP NK KA M
Sbjct: 220 TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANK-TDKASM 278
Query: 220 LDEIINYVQSLQQQVEFLSM 239
LDEII+YV+ LQ QV+ LSM
Sbjct: 279 LDEIIDYVKFLQLQVKVLSM 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,858,012
Number of extensions: 401104
Number of successful extensions: 1217
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 1216
Number of HSP's successfully gapped: 26
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)