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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0510500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0371) R2 : 0.00441
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.111 (0.0781) R2dN8 : 0.0057 R2N8 : 0.00441
σ : 0.698
deviance : 223.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.11 0.689 2.96 -0.293 0.332 0.201 -0.045 -0.515 0.0236 4.99 20.5 96 -- --
216.28 0.685 2.95 -0.193 0.327 0.239 0.23 -- 0.0443 4.82 20.4 90 -- --
215.11 0.683 2.96 -0.292 0.331 0.202 -- -0.505 0.0244 4.97 20.51 95 -- --
216.36 0.685 2.95 -0.202 0.339 0.239 -- -- 0.0441 4.92 20.42 131 -- --
220.67 0.692 2.96 -0.265 -- 0.144 -- -0.519 0.0472 -- 20.59 55 -- --
218.59 0.693 2.94 -0.138 0.305 -- 0.116 -- 0.0898 5.34 -- -- -- --
218.61 0.692 2.94 -0.138 0.306 -- -- -- 0.0893 5.44 -- -- -- --
221.85 0.694 2.96 -0.209 -- 0.25 -- -- 0.0691 -- 19 227 -- --
217.41 0.687 2.95 -- 0.336 0.21 -- -- 0.0716 5.02 20.4 128 -- --
223.5 0.699 2.95 -0.128 -- -- -- -- 0.0969 -- -- -- -- --
219.12 0.692 2.94 -- 0.304 -- -- -- 0.105 5.46 -- -- -- --
222.84 0.698 2.95 -- -- 0.179 -- -- 0.092 -- 19 227 -- --
223.93 0.698 2.94 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.20 wind 5.0 10 > th dose independent rect. 10 1
5 200.20 wind 5.0 10 > th dose dependent rect. 10 1
27 201.15 humidity 90.0 90 > th dose independent rect. 8 1
33 201.67 humidity 90.0 90 > th dose dependent rect. 8 1
41 202.53 wind 9.0 90 > th dose dependent rect. 19 15
42 202.54 wind 9.0 90 > th dose dependent rect. 21 13
48 203.10 radiation 1.0 10 < th dose independent rect. 7 5
50 203.10 radiation 1.0 10 < th dose dependent rect. 7 5
52 203.15 radiation 1.0 90 < th dose independent rect. 10 1
54 203.15 radiation 1.0 90 < th dose dependent rect. 10 1
57 203.20 radiation 1.0 10 < th dose independent rect. 11 1
74 203.20 radiation 1.0 10 < th dose dependent rect. 11 1
118 206.00 radiation 20.0 10 < th dose independent rect. 12 1
157 207.80 wind 7.0 90 > th dose independent rect. 22 12
173 208.94 radiation 40.0 10 < th dose dependent rect. 12 1
181 209.58 radiation 40.0 30 < th dose independent rect. 11 1
227 210.59 wind 9.0 90 > th dose independent rect. 19 15
265 211.15 humidity 90.0 720 < th dose independent rect. 24 3
302 211.60 humidity 90.0 720 < th dose independent rect. 24 5
305 211.64 radiation 30.0 270 < th dose independent rect. 9 1
307 211.65 radiation 40.0 90 < th dose independent rect. 9 4
321 211.77 atmosphere 1010.0 30 < th dose independent rect. 11 1
322 211.79 temperature 20.0 30 > th dose independent rect. 2 1
323 211.83 humidity 90.0 30 > th dose independent rect. 2 1
325 211.83 atmosphere 1000.0 30 > th dose independent rect. 2 1
329 211.84 temperature 25.0 30 < th dose independent rect. 2 1
332 211.88 temperature 30.0 30 < th dose dependent rect. 2 1
336 211.92 wind 9.0 30 < th dose independent rect. 2 1
337 211.92 temperature 10.0 30 > th dose independent rect. 2 1
340 211.92 humidity 50.0 30 > th dose independent rect. 2 1
344 211.92 atmosphere 1010.0 30 < th dose independent rect. 2 1
346 211.92 radiation 1.0 30 < th dose independent rect. 2 1
351 211.92 precipitation 0.1 30 < th dose independent rect. 2 1
352 211.92 temperature 10.0 30 > th dose independent rect. 3 23
353 211.92 humidity 50.0 30 > th dose dependent rect. 2 1
354 211.92 radiation 1.0 30 < th dose dependent rect. 2 1
359 211.92 precipitation 0.1 30 < th dose dependent rect. 2 1
364 211.93 wind 5.0 30 < th dose independent rect. 2 1
366 211.93 wind 7.0 90 > th dose independent rect. 22 3
369 211.94 wind 9.0 30 < th dose independent rect. 3 23
370 211.95 wind 7.0 90 > th dose independent rect. 22 6
371 211.95 atmosphere 1015.0 30 < th dose dependent rect. 2 1
375 211.96 atmosphere 995.0 30 > th dose dependent rect. 2 1
379 211.97 temperature 10.0 30 > th dose dependent rect. 2 1
382 212.00 wind 1.0 30 > th dose independent rect. 2 1
384 212.01 wind 7.0 90 > th dose dependent rect. 22 3
390 212.05 wind 1.0 10 < th dose independent rect. 2 2
391 212.05 radiation 40.0 10 < th dose independent rect. 11 17
392 212.05 wind 9.0 30 < th dose dependent rect. 2 1
393 212.05 wind 7.0 90 > th dose dependent rect. 22 6
417 212.10 wind 1.0 10 > th dose independent rect. 12 23
429 212.24 wind 7.0 720 > th dose dependent rect. 22 2
432 212.26 temperature 20.0 10 > th dose independent rect. 11 17
445 212.33 atmosphere 995.0 30 > th dose dependent rect. 12 23
459 212.40 atmosphere 1005.0 30 > th dose independent rect. 3 8
469 212.44 wind 7.0 720 > th dose independent rect. 22 2
482 212.51 atmosphere 1000.0 30 > th dose dependent rect. 3 8
514 212.59 wind 1.0 30 > th dose dependent rect. 2 1
530 212.64 wind 7.0 30 < th dose independent rect. 11 1
559 212.89 temperature 20.0 30 > th dose independent rect. 11 1
569 212.95 temperature 20.0 90 > th dose independent rect. 9 20
585 213.01 radiation 40.0 90 < th dose independent rect. 23 13
587 213.02 wind 5.0 10 < th dose independent rect. 4 7
588 213.03 temperature 20.0 270 > th dose independent rect. 22 14
589 213.03 temperature 20.0 10 > th dose independent rect. 9 20
591 213.03 wind 1.0 270 < th dose dependent rect. 24 1
606 213.09 temperature 20.0 30 > th dose independent rect. 24 12
609 213.09 wind 7.0 10 < th dose dependent rect. 5 6
612 213.10 radiation 40.0 270 < th dose independent rect. 8 19
618 213.11 atmosphere 1010.0 30 < th dose independent rect. 24 12
620 213.11 temperature 25.0 270 < th dose independent rect. 18 13
625 213.13 humidity 80.0 4320 < th dose dependent rect. 23 1
627 213.14 atmosphere 1005.0 10 > th dose independent rect. 5 6
638 213.18 wind 1.0 10 > th dose independent rect. 14 21
647 213.21 temperature 20.0 10 > th dose independent rect. 24 14
661 213.25 atmosphere 1005.0 30 > th dose independent rect. 12 23
697 213.40 wind 7.0 10 < th dose independent rect. 12 23
703 213.42 humidity 90.0 720 < th dose dependent rect. 24 1
705 213.43 wind 5.0 30 < th dose independent rect. 21 14
721 213.47 wind 7.0 720 > th dose independent rect. 22 10
733 213.51 humidity 90.0 30 < th dose independent rect. 11 1
749 213.55 radiation 40.0 10 < th dose independent rect. 24 13
754 213.56 wind 7.0 720 > th dose independent rect. 22 7
766 213.58 radiation 40.0 10 < th dose independent rect. 11 7
767 213.59 temperature 20.0 720 > th dose independent rect. 24 1
775 213.61 wind 7.0 720 > th dose dependent rect. 22 7
800 213.67 temperature 10.0 30 > th dose dependent rect. 11 1
806 213.69 radiation 40.0 10 < th dose independent rect. 11 10
812 213.71 atmosphere 1010.0 30 < th dose independent rect. 11 3
815 213.71 atmosphere 1010.0 30 < th dose independent rect. 11 16
833 213.75 radiation 40.0 270 < th dose independent rect. 8 9
834 213.75 wind 1.0 10 > th dose independent rect. 14 19
842 213.76 temperature 20.0 270 > th dose independent rect. 22 5
852 213.78 humidity 50.0 10 > th dose independent rect. 11 1
887 213.86 atmosphere 1010.0 30 < th dose independent rect. 9 3
889 213.86 temperature 20.0 30 > th dose independent rect. 20 16
905 213.89 radiation 40.0 720 < th dose independent rect. 24 10
912 213.89 radiation 40.0 10 < th dose dependent rect. 11 18
935 213.94 wind 1.0 90 < th dose independent rect. 24 4
940 213.94 wind 1.0 10 > th dose independent rect. 21 14
947 213.95 temperature 20.0 10 > th dose independent rect. 20 18
958 213.96 wind 1.0 10 > th dose independent rect. 3 8
961 213.96 wind 3.0 30 < th dose dependent rect. 24 5
969 213.98 radiation 1.0 1440 > th dose independent rect. 11 1
982 213.99 wind 9.0 30 < th dose dependent rect. 11 1
992 214.01 wind 3.0 270 < th dose dependent rect. 23 4
998 214.02 wind 1.0 10 < th dose independent rect. 2 7
1000 214.02 humidity 90.0 720 < th dose independent rect. 24 12