Os03g0802900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYC1.
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Os03g0802900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MYC1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.86 | 0.556 | 7.41 | -1.46 | 1.56 | -1.2 | -0.943 | 1.95 | -0.668 | 11.9 | 20.8 | 413 | 19.4 | 17.7 |
| 149.49 | 0.569 | 7.45 | -1.81 | 1.63 | -1.32 | -0.476 | -- | -0.758 | 11.3 | 20.8 | 449 | 19.5 | 16.4 |
| 142.12 | 0.555 | 7.42 | -1.49 | 1.51 | -1.29 | -- | 1.88 | -0.683 | 11.4 | 20.76 | 470 | 19 | 16.5 |
| 150.1 | 0.571 | 7.46 | -1.85 | 1.67 | -1.3 | -- | -- | -0.765 | 11.5 | 20.77 | 436 | 19.7 | 16.4 |
| 261.45 | 0.757 | 7.51 | -2.05 | -- | -0.682 | -- | 0.497 | -0.837 | -- | 20.76 | 470 | 19 | 16.5 |
| 201.04 | 0.665 | 7.53 | -2.17 | 1.35 | -- | -0.589 | -- | -0.991 | 13.7 | -- | -- | -- | -- |
| 202.4 | 0.666 | 7.53 | -2.19 | 1.35 | -- | -- | -- | -0.995 | 13.8 | -- | -- | -- | -- |
| 175.17 | 0.616 | 7.5 | -1.75 | -- | -1.34 | -- | -- | -0.736 | -- | 18.8 | 178 | 19.5 | 8.95 |
| 235.56 | 0.715 | 7.39 | -- | 1.61 | -1.55 | -- | -- | -0.476 | 11.5 | 20.71 | 487 | 18.9 | 17.4 |
| 313.3 | 0.827 | 7.55 | -2.25 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 328.81 | 0.848 | 7.48 | -- | 1.39 | -- | -- | -- | -0.751 | 13.8 | -- | -- | -- | -- |
| 271.2 | 0.767 | 7.49 | -- | -- | -1.44 | -- | -- | -0.714 | -- | 19.1 | 171 | 19.5 | 9.02 |
| 446.26 | 0.986 | 7.49 | -- | -- | -- | -- | -- | -0.776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.11 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 20 |
| 16 | 155.98 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 7 |
| 20 | 156.41 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 9 |
| 22 | 156.85 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 43 | 159.81 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 45 | 159.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 46 | 159.90 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 47 | 159.93 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 8 |
| 53 | 160.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 57 | 160.53 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 60 | 160.67 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 62 | 160.76 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 63 | 160.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 65 | 160.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 183 | 161.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 243 | 162.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 18 | 18 |
| 252 | 162.32 | wind | 9 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 299 | 162.54 | wind | 1 | 43200 | > th | dose dependent | sin | 4 | NA |
| 325 | 162.63 | wind | 9 | 43200 | < th | dose dependent | sin | 4 | NA |
| 348 | 162.70 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 357 | 162.72 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 392 | 162.81 | wind | 3 | 43200 | > th | dose independent | sin | 3 | NA |
| 442 | 162.93 | wind | 3 | 43200 | < th | dose independent | sin | 3 | NA |
| 444 | 162.93 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 482 | 163.02 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 516 | 163.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 541 | 163.12 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 544 | 163.13 | temperature | 20 | 720 | < th | dose independent | sin | 13 | NA |
| 558 | 163.16 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 567 | 163.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 576 | 163.18 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 18 | NA |
| 577 | 163.19 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 656 | 163.31 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 684 | 163.34 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 711 | 163.37 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 741 | 163.39 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 931 | 163.60 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 16 |
| 933 | 163.60 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 943 | 163.61 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 20 |
| 957 | 163.63 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 4 |