BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0613500 Os06g0613500|AK070970
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42300.1 | chr2:17621542-17624635 FORWARD LENGTH=328 104 2e-23
AT3G57800.1 | chr3:21408034-21411321 REVERSE LENGTH=427 89 7e-19
AT3G07340.1 | chr3:2341188-2343288 REVERSE LENGTH=457 89 1e-18
AT1G68920.1 | chr1:25915620-25917675 FORWARD LENGTH=487 84 2e-17
AT3G23690.1 | chr3:8528933-8530655 REVERSE LENGTH=372 84 4e-17
AT4G34530.1 | chr4:16498466-16499946 FORWARD LENGTH=336 82 1e-16
AT5G48560.1 | chr5:19684160-19686871 FORWARD LENGTH=499 80 4e-16
AT1G10120.1 | chr1:3304228-3305984 REVERSE LENGTH=367 80 6e-16
AT1G26260.1 | chr1:9087214-9089035 FORWARD LENGTH=391 79 8e-16
AT1G59640.2 | chr1:21909635-21911030 REVERSE LENGTH=344 79 1e-15
AT5G50915.1 | chr5:20710764-20712252 REVERSE LENGTH=287 75 1e-14
AT2G18300.3 | chr2:7952546-7954446 REVERSE LENGTH=365 73 5e-14
AT4G36540.1 | chr4:17243699-17244965 FORWARD LENGTH=305 72 1e-13
AT5G62610.1 | chr5:25133117-25134600 REVERSE LENGTH=282 70 3e-13
AT1G73830.1 | chr1:27760027-27761346 FORWARD LENGTH=262 66 7e-12
AT1G18400.1 | chr1:6331464-6333576 FORWARD LENGTH=261 65 2e-11
AT1G25330.1 | chr1:8880515-8882018 REVERSE LENGTH=224 61 2e-10
>AT2G42300.1 | chr2:17621542-17624635 FORWARD LENGTH=328
Length = 327
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 81/132 (61%), Gaps = 24/132 (18%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M+LL+ELVPGC K+ GTALVLDEIINHVQ+LQRQVE LSMRLAAVNPR+DF LD+ L +
Sbjct: 211 MKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRIDF-NLDSILAS 269
Query: 61 ECGRITGLNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDT 120
E G + MD G A + QLQQ W D H QP +W + D
Sbjct: 270 ENGSL--------MD---------GSFNAESYHQLQQ--WPFDGYH--QP--EWGREEDH 306
Query: 121 NPPVFSNSSSSL 132
+ FS S++L
Sbjct: 307 HQANFSMGSATL 318
>AT3G57800.1 | chr3:21408034-21411321 REVERSE LENGTH=427
Length = 426
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 70/124 (56%), Gaps = 13/124 (10%)
Query: 13 KVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTTECGRITGLNYKN 72
++ GTALVLDEIINHVQSLQRQVE LSMRLAAVNPR+DF LD L +E G + ++ N
Sbjct: 289 RIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRIDF-NLDTILASENGSLMDGSF-N 346
Query: 73 GMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDTNPPVFSNSSSSL 132
+ Q+ WP + + +Q F H L QPP+Q N PV+
Sbjct: 347 AAPM-QLAWPQQAI-------ETEQSFHHRQLQ---QPPTQQWPFDGLNQPVWGREEDQA 395
Query: 133 FGYD 136
G D
Sbjct: 396 HGND 399
>AT3G07340.1 | chr3:2341188-2343288 REVERSE LENGTH=457
Length = 456
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M+LL++LVPGC+KV+G AL+LDEIIN+VQSLQRQVE+LSM+L++VN R+DF +D L+
Sbjct: 284 MKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDF-NMDALLSK 342
Query: 61 ECGRITG--LNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQ 109
+ + ++++ + L+ +G H +NL QL ++ +PL+
Sbjct: 343 DIFPSSNNLMHHQQVLQLDSSAETLLGDHHNKNL-QLNPDISSNNVINPLE 392
>AT1G68920.1 | chr1:25915620-25917675 FORWARD LENGTH=487
Length = 486
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 48/51 (94%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
M+ L++LVPGC+KV+G A++LDEIIN+VQSLQRQVE+LSM+LA VNP++DF
Sbjct: 329 MKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF 379
>AT3G23690.1 | chr3:8528933-8530655 REVERSE LENGTH=372
Length = 371
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 48/51 (94%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
M LL++LVPGC++++G A++LDEIIN+VQSLQRQVE+LSM+LA VNPR++F
Sbjct: 217 MTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEF 267
>AT4G34530.1 | chr4:16498466-16499946 FORWARD LENGTH=336
Length = 335
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M+ L++LVPGC K++G A +LDEIIN+VQSLQRQ+E+LSM+LA VNPR DF +D+
Sbjct: 198 MKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDF-DMDDIFAK 256
Query: 61 ECG 63
E
Sbjct: 257 EVA 259
>AT5G48560.1 | chr5:19684160-19686871 FORWARD LENGTH=499
Length = 498
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVN-PRVDF 51
M+LL++LVPGC+KV+G AL+LDEIIN+VQSLQRQVE+LSM+L++VN R+DF
Sbjct: 327 MKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDF 378
>AT1G10120.1 | chr1:3304228-3305984 REVERSE LENGTH=367
Length = 366
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M LL+ELVPGC+K++G A++LDEIIN+VQSLQ+QVE+LSM+LA VNP ++ +D L
Sbjct: 232 MRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINI-DIDRILAK 290
Query: 61 E 61
+
Sbjct: 291 D 291
>AT1G26260.1 | chr1:9087214-9089035 FORWARD LENGTH=391
Length = 390
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M+ L++LVPGC KV+G A++LDEIIN+VQSLQ Q+E+LSM+L+AVNP +DF L++ L
Sbjct: 249 MKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDF-NLESLLAK 307
Query: 61 ECGRITGLNYKNGMDL 76
+ + + + + M +
Sbjct: 308 DALQSSAPTFPHNMSM 323
>AT1G59640.2 | chr1:21909635-21911030 REVERSE LENGTH=344
Length = 343
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 47/52 (90%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFG 52
M++L++LVPGC+KV G ALVLDEIIN++QSLQRQVE+LSM+L AVN R++ G
Sbjct: 162 MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPG 213
>AT5G50915.1 | chr5:20710764-20712252 REVERSE LENGTH=287
Length = 286
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRV-DFGG-LDNF- 57
M L+ LVPGC KV+G AL+LDEIIN+VQ+LQ QVE+LSM+L +++P V DFG LD
Sbjct: 162 MRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVYDFGSDLDGLI 221
Query: 58 LTTECGRI-TGLNYKNGMDLEQVTWPDM 84
L +E G G ++ N M +P +
Sbjct: 222 LQSEMGSPEVGTSFTNAMPTTTPIFPSL 249
>AT2G18300.3 | chr2:7952546-7954446 REVERSE LENGTH=365
Length = 364
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLD 55
M+ L+++VPGC+KV+G A +LDEIIN+VQ LQRQVE+LSM+LA +NP ++ D
Sbjct: 211 MKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVED 265
>AT4G36540.1 | chr4:17243699-17244965 FORWARD LENGTH=305
Length = 304
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 45/50 (90%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVD 50
M+ L+++VPGC+KV+G A +LDEIIN+VQSLQ+QVE+LSM+L+ +NP ++
Sbjct: 167 MKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELE 216
>AT5G62610.1 | chr5:25133117-25134600 REVERSE LENGTH=282
Length = 281
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVN 46
M L++++PGC+K+ G ALVLDEIIN++QSLQRQVE+LSM+L VN
Sbjct: 179 MTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVN 224
>AT1G73830.1 | chr1:27760027-27761346 FORWARD LENGTH=262
Length = 261
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGG 53
++ L+++VPGC K G A +LDEIIN+VQSLQ QVE+LSM+L A + DF
Sbjct: 173 LKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNS 225
>AT1G18400.1 | chr1:6331464-6333576 FORWARD LENGTH=261
Length = 260
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGG 53
+ L+++VPGC K G A +LDEIIN+VQSLQ QVE+LSM+L A + DF
Sbjct: 171 LRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNS 223
>AT1G25330.1 | chr1:8880515-8882018 REVERSE LENGTH=224
Length = 223
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 41/55 (74%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLD 55
++ L++LVPGC K G A++LD II++V+SLQ Q+E+LSM+L+A + D LD
Sbjct: 130 LKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLD 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,542,527
Number of extensions: 141637
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 17
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)