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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0111500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0341) R2 : 0.13
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.28 (0.645) R2dE : 0.128 R2E : 0.128
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0737 (0.0718) R2dN8 : 0.00259 R2N8 : 0.00281
σ : 0.643
deviance : 189.45
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 78.41
memory length : 5
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.35
open length of G : 2.44

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.42 0.639 2.89 0.104 0.0473 2.56 0.531 11.9 -0.0675 19.3 80 10 5 1
188.49 0.644 2.89 0.0804 0.0496 5.34 0.509 -- -0.0661 19.3 80 10 5 1
189.16 0.641 2.89 0.0944 0.0511 2.55 -- 11.7 -0.0653 18.5 79.77 16 4.99 1.39
189.18 0.645 2.89 0.0701 0.0523 5.29 -- -- -0.0649 18.4 79.77 16 4.99 1.39
189.29 0.641 2.89 0.0929 -- 2.51 -- 11.8 -0.0671 -- 79.72 14 4.99 1.78
216.63 0.69 2.89 0.121 0.00805 -- 0.299 -- -0.076 20.7 -- -- -- --
216.92 0.69 2.89 0.111 0.00752 -- -- -- -0.0762 22.2 -- -- -- --
189.33 0.644 2.89 0.0689 -- 5.27 -- -- -0.0661 -- 78.42 4 4.24 2.31
189.31 0.644 2.89 -- 0.0515 5.3 -- -- -0.0727 18.5 79.77 16 4.99 1.39
216.93 0.688 2.89 0.111 -- -- -- -- -0.0762 -- -- -- -- --
217.24 0.689 2.9 -- 0.00835 -- -- -- -0.0885 23.2 -- -- -- --
189.45 0.643 2.89 -- -- 5.28 -- -- -0.0737 -- 78.41 5 4.35 2.44
217.25 0.688 2.9 -- -- -- -- -- -0.0885 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.42 humidity 80.0 10 < th dose independent rect. 5 1
6 188.42 humidity 80.0 10 < th dose dependent rect. 5 1
28 192.32 wind 3.0 10 > th dose dependent rect. 6 1
33 194.98 wind 7.0 90 > th dose independent rect. 20 2
35 195.00 wind 7.0 90 > th dose dependent rect. 21 1
38 195.02 precipitation 0.1 90 > th dose independent rect. 21 1
40 195.02 precipitation 0.1 90 > th dose dependent rect. 21 1
92 195.13 precipitation 0.1 10 > th dose independent rect. 21 1
103 195.13 precipitation 0.1 10 > th dose dependent rect. 21 1
113 195.31 wind 3.0 10 > th dose independent rect. 5 2
114 195.52 wind 3.0 10 > th dose dependent rect. 2 5
115 195.59 wind 3.0 10 > th dose independent rect. 2 5
134 195.96 wind 3.0 10 > th dose dependent rect. 4 3
193 197.41 atmosphere 1005.0 10 < th dose independent rect. 20 2
221 197.90 atmosphere 1005.0 90 < th dose independent rect. 20 1
242 198.25 atmosphere 1000.0 90 < th dose dependent rect. 19 2
296 199.22 atmosphere 1005.0 10 < th dose independent rect. 18 5
311 199.73 atmosphere 1000.0 10 < th dose dependent rect. 19 3
340 200.42 humidity 80.0 270 < th dose dependent rect. 2 4
417 202.90 temperature 20.0 30 < th dose independent rect. 6 2
419 202.91 wind 7.0 30 > th dose dependent sin 11 NA
431 202.98 temperature 20.0 90 < th dose dependent rect. 6 1
454 203.10 atmosphere 1010.0 90 < th dose dependent rect. 19 3
469 203.28 precipitation 0.1 90 < th dose independent sin 15 NA
471 203.28 precipitation 0.1 90 < th dose dependent sin 15 NA
475 203.30 precipitation 0.1 90 > th dose independent sin 15 NA
484 203.41 atmosphere 1010.0 10 < th dose dependent rect. 22 1
498 203.57 atmosphere 1010.0 10 < th dose dependent rect. 20 2
510 203.71 wind 7.0 720 > th dose independent rect. 20 2
512 203.75 wind 5.0 720 > th dose dependent rect. 21 1
525 203.83 radiation 1.0 90 < th dose dependent rect. 7 1
626 204.19 wind 7.0 720 > th dose dependent rect. 19 3
708 204.61 wind 5.0 720 < th dose independent rect. 19 5
714 204.63 humidity 80.0 30 > th dose independent rect. 22 11
715 204.63 precipitation 0.1 30 > th dose dependent sin 15 NA
833 205.11 wind 3.0 720 < th dose independent rect. 23 1
972 205.48 wind 1.0 90 < th dose dependent rect. 16 5
994 205.53 humidity 80.0 30 > th dose independent rect. 20 3
995 205.53 wind 7.0 720 < th dose dependent rect. 23 1