BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0111500 Os01g0111500|AK108587
(295 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0111500 Basic helix-loop-helix dimerisation region bHL... 409 e-114
Os02g0710300 Similar to INDEHISCENT protein 158 5e-39
Os06g0496400 122 3e-28
Os03g0617800 Similar to INDEHISCENT protein 98 6e-21
Os12g0589000 97 1e-20
Os12g0508500 94 1e-19
Os11g0634700 92 6e-19
Os03g0205300 89 3e-18
Os07g0588400 86 3e-17
Os03g0764200 79 6e-15
Os06g0184000 77 1e-14
Os05g0541400 Similar to Transcription factor LAX PANICLE 74 1e-13
Os06g0193400 Similar to Helix-loop-helix protein homolog 74 1e-13
Os01g0707500 Similar to Transcription factor LAX PANICLE 73 3e-13
Os01g0831000 Transcription factor LAX PANICLE 72 4e-13
Os01g0566800 Basic helix-loop-helix dimerisation region bHL... 72 4e-13
Os03g0797600 Similar to Helix-loop-helix protein homolog 71 8e-13
Os02g0795800 71 8e-13
Os06g0210600 69 5e-12
>Os01g0111500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 295
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/295 (72%), Positives = 214/295 (72%)
Query: 1 MMAAQASSKRGMLLPREAVLYDDEPSMPLEILXXXXXXXXXXXCVDADYYYXXXXXXXXX 60
MMAAQASSKRGMLLPREAVLYDDEPSMPLEIL CVDADYYY
Sbjct: 1 MMAAQASSKRGMLLPREAVLYDDEPSMPLEILGYHGNGVGGGGCVDADYYYSWSGSSSSS 60
Query: 61 XXXXXXFDQAAVGGSGGGCARQLAFHPXXXXXXXXXXXXXXXXXXVENTSVVAGGGNNYC 120
FDQAAVGGSGGGCARQLAFHP VENTSVVAGGGNNYC
Sbjct: 61 SSSVLSFDQAAVGGSGGGCARQLAFHPGGDDDDCAMWMDAAAGAMVENTSVVAGGGNNYC 120
Query: 121 HRLQFHGGAAGFGLASPGSSVVDNGLEIHESNVSXXXXXXXXXXXXXSGEARAAGKKQCR 180
HRLQFHGGAAGFGLASPGSSVVDNGLEIHESNVS SGEARAAGKKQCR
Sbjct: 121 HRLQFHGGAAGFGLASPGSSVVDNGLEIHESNVSKPPPPAAKKRACPSGEARAAGKKQCR 180
Query: 181 KGXXXXXXXXXXXXXXXXXXXXXXXXEQPQSAAAKVRRERISERLKVLQDLVPNGTKVDL 240
KG EQPQSAAAKVRRERISERLKVLQDLVPNGTKVDL
Sbjct: 181 KGSKPNKAASASSPSPSPSPSPSPNKEQPQSAAAKVRRERISERLKVLQDLVPNGTKVDL 240
Query: 241 VTMLEKAINYVKFLQLQVKVLATDEFWPAQGGKAPELSQVKDALDAILSSQHPNK 295
VTMLEKAINYVKFLQLQVKVLATDEFWPAQGGKAPELSQVKDALDAILSSQHPNK
Sbjct: 241 VTMLEKAINYVKFLQLQVKVLATDEFWPAQGGKAPELSQVKDALDAILSSQHPNK 295
>Os02g0710300 Similar to INDEHISCENT protein
Length = 300
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 81/85 (95%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFWP 268
PQS AAK RRERISERL++LQ+LVPNGTKVDLVTMLEKAI+YVKFLQLQVKVLATDEFWP
Sbjct: 209 PQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLATDEFWP 268
Query: 269 AQGGKAPELSQVKDALDAILSSQHP 293
AQGGKAPE+SQVK+ALDAILSS P
Sbjct: 269 AQGGKAPEISQVKEALDAILSSSSP 293
>Os06g0496400
Length = 294
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 72/82 (87%)
Query: 207 EQPQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEF 266
++ QS+AAK RRERISERL+ LQ+LVP+G KVD+VTML++AI+YVKF+Q+Q++VL TD F
Sbjct: 197 KETQSSAAKSRRERISERLRALQELVPSGGKVDMVTMLDRAISYVKFMQMQLRVLETDAF 256
Query: 267 WPAQGGKAPELSQVKDALDAIL 288
WPA G P++S+VKDALDAI+
Sbjct: 257 WPASDGATPDISRVKDALDAII 278
>Os03g0617800 Similar to INDEHISCENT protein
Length = 310
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 54/59 (91%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFW 267
PQS A+ RRERI+ERLK+LQ+LVPNGTKVD+ TMLE+A++YVKFLQLQ+K+L++DE W
Sbjct: 231 PQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLLSSDEMW 289
>Os12g0589000
Length = 304
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 53/59 (89%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFW 267
PQS A+ RRERI+ERLK LQ+LVPNGTKVD+ TMLE+A++YVKFLQLQ+K+L++DE W
Sbjct: 226 PQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMW 284
>Os12g0508500
Length = 198
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 207 EQPQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEF 266
E QS AK RR+RI+ERL++LQ+L+PNGTKVD+ TMLE+AI YVKFL LQ+K+L++DE
Sbjct: 116 ESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHLQIKLLSSDEM 175
Query: 267 W 267
W
Sbjct: 176 W 176
>Os11g0634700
Length = 246
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 51/58 (87%)
Query: 210 QSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFW 267
QS AK RRERI+ERL++LQ LVPNGTKVD+ TMLE+A+ YVKFLQLQ+K+L++D+ W
Sbjct: 166 QSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTW 223
>Os03g0205300
Length = 352
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 49/51 (96%)
Query: 217 RRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFW 267
RRERI+ERLK+LQ+L+PNGTKVD+ TMLE+A++YVKFLQLQ+K+L++D+ W
Sbjct: 278 RRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMW 328
>Os07g0588400
Length = 256
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 47/52 (90%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKV 260
PQS A+ RRERI+ERL++LQ+LVPNGTKVD+ TMLE+A+ YVKFLQLQ+KV
Sbjct: 197 PQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKV 248
>Os03g0764200
Length = 297
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 51/58 (87%)
Query: 210 QSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFW 267
QS A+ RRERI+ RL++LQ LVPNGTKVD+ TMLE+A++YVKFLQLQ+K+L++DE W
Sbjct: 218 QSLYARRRRERINGRLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKMLSSDELW 275
>Os06g0184000
Length = 430
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFWP 268
P S A ++RRERI+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 224 PHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGG 283
Query: 269 AQG 271
A G
Sbjct: 284 AAG 286
>Os05g0541400 Similar to Transcription factor LAX PANICLE
Length = 414
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 46/55 (83%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLAT 263
PQ+ AA++RRER+SERL+VLQ LVP G+K+D TML++A +Y+KFL+ Q++ L T
Sbjct: 305 PQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALET 359
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLA 262
P S A ++RRE+ISER+K LQ LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 326 PHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLS 379
>Os01g0707500 Similar to Transcription factor LAX PANICLE
Length = 393
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLAT 263
PQ+ AA++RRER+S+RL+VLQ LVP G K+D +ML++A +Y+KFL+ QV+ L T
Sbjct: 285 PQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLET 339
>Os01g0831000 Transcription factor LAX PANICLE
Length = 215
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKV 260
PQS AA+ RR RIS+R +VL+ LVP G+K+D V+MLE+AI+YVKFL+ QV +
Sbjct: 44 PQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTL 95
>Os01g0566800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 496
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLAT 263
PQ+ AA+ RRERISERL+VLQ LVP G K+D +ML++A NY++FL+ Q++ L T
Sbjct: 386 PQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQT 440
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLA 262
P S A ++RRERI+ER++ LQ+LVPN K D ML++ ++YVKFL+LQVKVL+
Sbjct: 143 PHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLS 196
>Os02g0795800
Length = 463
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 216 VRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLA 262
+RRERI+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 251 LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 297
>Os06g0210600
Length = 211
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 208 QPQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVL 261
+PQS AA++RRER+S+R++ LQ LVP G ++D +MLE+AI YVKFL+ V+ L
Sbjct: 123 EPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLKGHVQSL 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,596,066
Number of extensions: 249389
Number of successful extensions: 801
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 22
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)