Os01g0831000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor LAX PANICLE.
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Os01g0831000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor LAX PANICLE.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.65 | 0.594 | 2.81 | 0.0685 | 0.162 | 9.51 | -0.614 | 23.1 | -0.04 | 22.5 | 5 | 90 | 1 | 1 |
| 171.24 | 0.609 | 2.77 | 0.218 | 0.126 | 6.92 | -1.11 | -- | 0.0933 | 20.6 | 4.107 | 126 | 1.23 | 0.478 |
| 164.03 | 0.597 | 2.81 | 0.0924 | 0.17 | 9.53 | -- | 23.1 | -0.0397 | 23.7 | 5.069 | 79 | 1 | 1.15 |
| 167.66 | 0.603 | 2.79 | 0.0679 | 0.122 | 5.43 | -- | -- | -0.0452 | 21.8 | 4.382 | 123 | 1.29 | 0.517 |
| 165.86 | 0.6 | 2.8 | 0.0958 | -- | 9.63 | -- | 23.6 | -0.0349 | -- | 5.069 | 75 | 1.01 | 1.17 |
| 206.7 | 0.674 | 2.81 | 0.0374 | 0.232 | -- | -0.427 | -- | -0.0656 | 23.7 | -- | -- | -- | -- |
| 207.38 | 0.674 | 2.81 | 0.0531 | 0.238 | -- | -- | -- | -0.0649 | 0.428 | -- | -- | -- | -- |
| 167.77 | 0.603 | 2.8 | 0.0541 | -- | 5.19 | -- | -- | -0.0329 | -- | 4.1 | 129 | 1.3 | 0.533 |
| 165.81 | 0.6 | 2.8 | -- | 0.156 | 5.3 | -- | -- | -0.0331 | 21.9 | 4.1 | 131 | 1.32 | 0.52 |
| 210.94 | 0.679 | 2.8 | 0.0613 | -- | -- | -- | -- | -0.061 | -- | -- | -- | -- | -- |
| 207.45 | 0.674 | 2.81 | -- | 0.239 | -- | -- | -- | -0.0708 | 0.439 | -- | -- | -- | -- |
| 167.18 | 0.602 | 2.8 | -- | -- | 5.24 | -- | -- | -0.0347 | -- | 4.103 | 131 | 1.32 | 0.528 |
| 211.04 | 0.678 | 2.8 | -- | -- | -- | -- | -- | -0.0678 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.65 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 4 | 162.65 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 9 | 162.90 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 39 | 170.64 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 155 | 184.45 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 156 | 184.45 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 163 | 184.73 | wind | 9.0 | 30 | > th | dose independent | rect. | 19 | 7 |
| 173 | 184.75 | wind | 9.0 | 30 | > th | dose dependent | rect. | 19 | 7 |
| 277 | 184.84 | wind | 9.0 | 270 | > th | dose independent | rect. | 19 | 3 |
| 278 | 184.85 | wind | 9.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 280 | 184.85 | wind | 9.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 635 | 189.10 | wind | 9.0 | 30 | > th | dose dependent | rect. | 17 | 9 |
| 670 | 189.73 | wind | 9.0 | 30 | > th | dose dependent | sin | 11 | NA |
| 716 | 190.86 | wind | 9.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 720 | 190.87 | wind | 9.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 760 | 191.36 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 10 |