BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0831000 Os01g0831000|AB115668
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0831000 Transcription factor LAX PANICLE 336 6e-93
Os01g0707500 Similar to Transcription factor LAX PANICLE 86 2e-17
Os01g0566800 Basic helix-loop-helix dimerisation region bHL... 86 2e-17
Os05g0541400 Similar to Transcription factor LAX PANICLE 82 3e-16
Os06g0210600 79 3e-15
Os02g0710300 Similar to INDEHISCENT protein 77 9e-15
Os03g0617800 Similar to INDEHISCENT protein 77 1e-14
Os12g0589000 76 2e-14
Os07g0588400 74 6e-14
Os01g0111500 Basic helix-loop-helix dimerisation region bHL... 72 3e-13
Os08g0471401 71 6e-13
Os11g0634700 70 1e-12
Os09g0455300 Similar to INDEHISCENT protein 69 4e-12
>Os01g0831000 Transcription factor LAX PANICLE
Length = 215
Score = 336 bits (862), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/215 (79%), Positives = 171/215 (79%)
Query: 1 MHDPRGFPIHPQPYHLHPTAXXXXXXXXXXXXXXXXXAKLSTDPQSVAARERRHRISDRF 60
MHDPRGFPIHPQPYHLHPTA AKLSTDPQSVAARERRHRISDRF
Sbjct: 1 MHDPRGFPIHPQPYHLHPTAGGLGEGRMRGGGRRRPGAKLSTDPQSVAARERRHRISDRF 60
Query: 61 RVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQAALVQHEEGCQHXXXXXXXXXXX 120
RVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQAALVQHEEGCQH
Sbjct: 61 RVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQAALVQHEEGCQHADVAAAFSAAD 120
Query: 121 XXXXXXXNHRHXXXXXXXXXMTTLEMAPMQEAVGYGDGPAHQMMQQALDPAGQLMMGGAH 180
NHRH MTTLEMAPMQEAVGYGDGPAHQMMQQALDPAGQLMMGGAH
Sbjct: 121 ADLALELNHRHGGAGDDDAGMTTLEMAPMQEAVGYGDGPAHQMMQQALDPAGQLMMGGAH 180
Query: 181 QLPPLPCCVFVQETDPSCYSVCNVHGEESGAQGSY 215
QLPPLPCCVFVQETDPSCYSVCNVHGEESGAQGSY
Sbjct: 181 QLPPLPCCVFVQETDPSCYSVCNVHGEESGAQGSY 215
>Os01g0707500 Similar to Transcription factor LAX PANICLE
Length = 393
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 48/55 (87%)
Query: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV 93
++S+DPQ+VAAR RR R+SDR RVL+ LVPGG+KMDT SML++A Y+KFLK+QV
Sbjct: 280 RISSDPQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQV 334
>Os01g0566800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 496
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 50/55 (90%)
Query: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV 93
++S+DPQ+VAAR+RR RIS+R RVL+ LVPGG+KMDT SML++A +Y++FLK+Q+
Sbjct: 381 RISSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQI 435
>Os05g0541400 Similar to Transcription factor LAX PANICLE
Length = 414
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 48/55 (87%)
Query: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV 93
++S+DPQ+VAAR RR R+S+R RVL+ LVPGGSKMDT +ML++A Y+KFLK+Q+
Sbjct: 300 RISSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQL 354
>Os06g0210600
Length = 211
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 40 LSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV-TLHQA 98
+S++PQSVAAR RR R+S R R L+ LVPGG+++DT SMLE+AI YVKFLK V +L +A
Sbjct: 120 VSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLKGHVQSLERA 179
Query: 99 ALVQH 103
A H
Sbjct: 180 AAALH 184
>Os02g0710300 Similar to INDEHISCENT protein
Length = 300
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 41 STDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTL 95
+ DPQS+AA+ RR RIS+R R+L+ LVP G+K+D V+MLE+AI YVKFL+ QV +
Sbjct: 206 TKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKV 260
>Os03g0617800 Similar to INDEHISCENT protein
Length = 310
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 47/55 (85%)
Query: 41 STDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTL 95
+TDPQS+ AR+RR RI++R ++L++LVP G+K+D +MLE+A+HYVKFL+ Q+ L
Sbjct: 228 ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKL 282
>Os12g0589000
Length = 304
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 46/55 (83%)
Query: 41 STDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTL 95
+TDPQS+ AR+RR RI++R + L++LVP G+K+D +MLE+A+HYVKFL+ Q+ L
Sbjct: 223 ATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKL 277
>Os07g0588400
Length = 256
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Query: 41 STDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV---TLH 96
+TDPQS+ AR+RR RI++R R+L++LVP G+K+D +MLE+A+ YVKFL+ Q+ TLH
Sbjct: 194 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKVGTLH 252
>Os01g0111500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 295
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 44 PQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTL 95
PQS AA+ RR RIS+R +VL+ LVP G+K+D V+MLE+AI+YVKFL+ QV +
Sbjct: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKV 260
>Os08g0471401
Length = 246
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 54/62 (87%), Gaps = 1/62 (1%)
Query: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV-TLHQ 97
++STDPQSVAAR RR RIS+R R+L+ LVPGG+KMDT SML++AIHYVKFLK QV +L +
Sbjct: 156 RISTDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLER 215
Query: 98 AA 99
AA
Sbjct: 216 AA 217
>Os11g0634700
Length = 246
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 41 STDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTL 95
S D QS+ A+ RR RI++R R+L+ LVP G+K+D +MLE+A+ YVKFL+ Q+ L
Sbjct: 162 SKDTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKL 216
>Os09g0455300 Similar to INDEHISCENT protein
Length = 236
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 49/55 (89%)
Query: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV 93
++S DPQSVAAR RR RIS+R R+L+ LVPGG+KMDT SML++AIHYVKFLK+QV
Sbjct: 146 RISKDPQSVAARLRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQV 200
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,472,482
Number of extensions: 214744
Number of successful extensions: 532
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 15
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)