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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0455300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to INDEHISCENT protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0666) R2 : 0.222
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.93 (0.206) R2dC : 0.228 R2C : 0.000172
β3 : -2.14 (0.274) R2dE : 0.158 R2E : -0.0814
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.769 (0.14) R2dN8 : 0.0684 R2N8 : 0.0548
σ : 1.25
deviance : 721.19
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_____
C
peak time of C : 3.44
E
wheather : wind
threshold : 10.53
memory length : 56
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 21.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
718.97 1.26 4.31 -0.284 1.88 -2.06 0.393 -0.575 0.757 3.42 11.35 55 20.1 21.4
719.27 1.25 4.3 -0.28 1.91 -2.09 0.182 -- 0.766 3.43 11.06 54 20.1 21.5
719.17 1.25 4.31 -0.276 1.91 -2.1 -- -0.307 0.755 3.44 10.99 55 20.1 21.5
719.32 1.25 4.3 -0.276 1.91 -2.1 -- -- 0.758 3.43 11 55 20.1 21.5
757.11 1.28 4.43 -0.419 -- -1.84 -- -1.48 0.465 -- 21.21 936 19.4 20
783.59 1.31 4.34 -0.514 1.16 -- 0.901 -- 0.722 1.04 -- -- -- --
786.92 1.31 4.34 -0.547 1.16 -- -- -- 0.716 1.15 -- -- -- --
754.86 1.28 4.36 -0.354 -- -1.83 -- -- 0.606 -- 26.76 899 20 20.2
721.19 1.25 4.3 -- 1.93 -2.14 -- -- 0.769 3.44 10.53 56 20 21.6
869.69 1.38 4.32 -0.503 -- -- -- -- 0.739 -- -- -- -- --
794.81 1.32 4.32 -- 1.15 -- -- -- 0.777 1.13 -- -- -- --
758.01 1.28 4.35 -- -- -1.88 -- -- 0.661 -- 27.51 896 19.9 20.7
876.36 1.38 4.31 -- -- -- -- -- 0.795 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 724.94 wind 7.0 270 < th dose independent rect. 11 14
2 726.07 wind 7.0 270 < th dose independent rect. 18 23
4 727.02 wind 9.0 90 < th dose dependent rect. 20 21
11 728.80 wind 7.0 30 < th dose independent rect. 20 22
13 729.06 radiation 20.0 90 < th dose dependent rect. 17 17
14 729.16 wind 5.0 14400 > th dose dependent rect. 15 8
15 729.25 wind 5.0 14400 > th dose dependent rect. 15 6
17 729.32 wind 5.0 14400 > th dose dependent rect. 18 3
18 729.38 wind 1.0 14400 > th dose dependent rect. 13 19
19 729.38 wind 9.0 14400 < th dose dependent rect. 13 19
20 729.42 wind 1.0 14400 > th dose dependent rect. 20 2
35 729.76 wind 9.0 14400 < th dose dependent rect. 20 2
40 729.79 wind 7.0 14400 < th dose independent rect. 15 6
42 729.80 wind 7.0 14400 > th dose independent rect. 15 6
48 729.86 radiation 10.0 43200 > th dose independent rect. 17 1
81 730.11 radiation 10.0 90 < th dose independent rect. 17 17
84 730.12 radiation 1.0 30 < th dose independent rect. 4 16
102 730.33 wind 9.0 14400 < th dose dependent rect. 1 21
125 730.53 wind 1.0 14400 > th dose dependent rect. 1 21
128 730.54 wind 1.0 14400 > th dose dependent rect. 3 20
161 730.73 wind 7.0 14400 < th dose independent rect. 18 3
168 730.76 wind 1.0 14400 > th dose dependent sin 14 NA
188 730.84 wind 9.0 14400 < th dose dependent sin 14 NA
215 730.96 wind 9.0 14400 < th dose dependent no NA NA
227 731.00 wind 9.0 14400 < th dose dependent rect. 17 23
247 731.11 wind 1.0 14400 > th dose dependent no NA NA
248 731.11 precipitation 0.1 43200 > th dose dependent rect. 17 3
249 731.11 temperature 30.0 30 < th dose dependent rect. 20 8
250 731.11 wind 9.0 14400 < th dose dependent rect. 20 23
251 731.12 wind 7.0 14400 < th dose independent sin 17 NA
254 731.14 radiation 1.0 30 < th dose independent rect. 4 19
255 731.14 wind 1.0 14400 > th dose dependent rect. 17 23
262 731.17 wind 9.0 14400 < th dose dependent rect. 7 23
264 731.19 wind 3.0 14400 < th dose independent rect. 20 2
269 731.20 wind 5.0 14400 > th dose dependent sin 17 NA
282 731.26 wind 1.0 14400 > th dose dependent rect. 20 23
286 731.28 wind 1.0 14400 > th dose dependent rect. 7 23
303 731.35 wind 9.0 270 < th dose dependent rect. 20 19
308 731.37 wind 7.0 14400 > th dose independent sin 17 NA
327 731.47 wind 7.0 14400 > th dose independent rect. 18 3
347 731.55 temperature 30.0 30 < th dose dependent rect. 20 10
353 731.57 wind 3.0 14400 > th dose independent rect. 20 2
361 731.60 wind 7.0 14400 > th dose independent rect. 12 11
378 731.64 temperature 25.0 10 > th dose independent rect. 22 10
395 731.69 radiation 10.0 10 < th dose dependent rect. 4 19
428 731.79 radiation 1.0 30 < th dose dependent rect. 4 16
446 731.85 temperature 30.0 270 < th dose dependent rect. 20 7
539 732.15 humidity 80.0 43200 < th dose independent rect. 20 3
685 732.73 wind 7.0 14400 > th dose independent rect. 6 15
738 732.88 humidity 80.0 43200 > th dose independent rect. 20 3
775 733.02 humidity 80.0 43200 > th dose independent rect. 21 1
776 733.02 humidity 80.0 43200 < th dose independent rect. 21 1
779 733.02 wind 7.0 14400 < th dose dependent sin 1 NA
802 733.10 wind 9.0 90 < th dose dependent rect. 12 15
955 733.50 radiation 20.0 10 < th dose dependent rect. 17 19
996 733.57 wind 1.0 14400 > th dose dependent sin 1 NA