BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0455300 Os09g0455300|AK070458
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0455300 Similar to INDEHISCENT protein 316 1e-86
Os08g0471401 179 2e-45
Os08g0108500 Similar to Transcription factor LAX PANICLE 111 5e-25
Os01g0707500 Similar to Transcription factor LAX PANICLE 95 4e-20
Os01g0566800 Basic helix-loop-helix dimerisation region bHL... 90 1e-18
Os05g0541400 Similar to Transcription factor LAX PANICLE 72 3e-13
Os06g0210600 66 3e-11
>Os09g0455300 Similar to INDEHISCENT protein
Length = 236
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/236 (71%), Positives = 168/236 (71%)
Query: 1 MDFDLFNSYPESQLDLMSTMLQLEQLTALSDQSLFMAAPTSPPVSPMGTXXXXXXXXXXM 60
MDFDLFNSYPESQLDLMSTMLQLEQLTALSDQSLFMAAPTSPPVSPMGT M
Sbjct: 1 MDFDLFNSYPESQLDLMSTMLQLEQLTALSDQSLFMAAPTSPPVSPMGTPSPQFSPPPQM 60
Query: 61 SVTTTTAGGGYQDQYNSMPATYGAGAGVHQLDFAMXXXXXXXXXXXXXXXXXXXEAMREM 120
SVTTTTAGGGYQDQYNSMPATYGAGAGVHQLDFAM EAMREM
Sbjct: 61 SVTTTTAGGGYQDQYNSMPATYGAGAGVHQLDFAMSSPGSDSGAPQGSSSSSSSEAMREM 120
Query: 121 IFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKM 180
IFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAA VPGGTKM
Sbjct: 121 IFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAARLRRERISERIRILQRLVPGGTKM 180
Query: 181 DTASMLDEAIHYVKFLKSQVQSLERXXXXXXXXXXXXXXXXXXXXXXLPMQHHAPW 236
DTASMLDEAIHYVKFLKSQVQSLER LPMQHHAPW
Sbjct: 181 DTASMLDEAIHYVKFLKSQVQSLERAAAATGAAAHRAAAFGAAYPAALPMQHHAPW 236
>Os08g0471401
Length = 246
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 122/215 (56%), Gaps = 10/215 (4%)
Query: 1 MDFDLFNSYPESQLDLMSTMLQLEQLTALSDQSLFM--AAPTSPPVSPMGTXXXXXXXXX 58
M+FD+ NS PE+QL+LM+TMLQLEQL+A D + +PTSP + G
Sbjct: 1 MEFDMLNSNPEAQLELMNTMLQLEQLSAFPDHHGMVVPCSPTSPCMGAQGGHHHFSSVNH 60
Query: 59 XMSVTTTTAGG-----GYQDQYNSM---PATYGAGAGVHQLDFAMXXXXXXXXXXXXXXX 110
+ ++GG GY+DQY + A Y AG +
Sbjct: 61 QPAHGVVSSGGANTGDGYRDQYYTQLLPAAAYSNAAGGGRGSEYHTTTTTRPASGGGGDG 120
Query: 111 XXXXEAMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXX 170
AMREMIFHIAALQPV IDPE VRPPKRRNVRIS DPQSVAA
Sbjct: 121 GVGPAAMREMIFHIAALQPVNIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRIL 180
Query: 171 XXXVPGGTKMDTASMLDEAIHYVKFLKSQVQSLER 205
VPGGTKMDTASMLDEAIHYVKFLK+QVQSLER
Sbjct: 181 QRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLER 215
>Os08g0108500 Similar to Transcription factor LAX PANICLE
Length = 306
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 64/89 (71%)
Query: 116 AMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
AM+EM++ IAA+QPV+IDP ++ P+RRNVRIS DPQSVAA VP
Sbjct: 132 AMKEMMYRIAAMQPVDIDPATIKKPRRRNVRISDDPQSVAARHRRERISERIRILQRLVP 191
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GGTKMDTASMLDEAI Y+KFLK QVQ L+
Sbjct: 192 GGTKMDTASMLDEAIRYIKFLKRQVQELQ 220
>Os01g0707500 Similar to Transcription factor LAX PANICLE
Length = 393
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 117 MREMIFHIAALQPVEIDPEAVR-PPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
++EMI+ AA++PV + EA P+R+NVRIS DPQ+VAA VP
Sbjct: 250 VKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQKLVP 309
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GG KMDTASMLDEA Y+KFLKSQVQ LE
Sbjct: 310 GGNKMDTASMLDEAASYLKFLKSQVQKLE 338
>Os01g0566800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 496
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 117 MREMIFHIAALQPVEIDPE-AVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
++EMI+ AA++PV + E A P+RRNVRIS DPQ+VAA VP
Sbjct: 351 VKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVP 410
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GG KMDTASMLDEA +Y++FLKSQ++ L+
Sbjct: 411 GGAKMDTASMLDEAANYLRFLKSQIRELQ 439
>Os05g0541400 Similar to Transcription factor LAX PANICLE
Length = 414
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 117 MREMIFHIAALQPVEIDPEAVRPPKR------------RNVRISKDPQSVAAXXXXXXXX 164
++EM++ A ++PV + A +NVRIS DPQ+VAA
Sbjct: 259 VKEMVYRAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRISSDPQTVAARLRRERVS 318
Query: 165 XXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
VPGG+KMDTA+MLDEA Y+KFLKSQ+++LE
Sbjct: 319 ERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALE 358
>Os06g0210600
Length = 211
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 37/59 (62%)
Query: 147 ISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKSQVQSLER 205
+S +PQSVAA VPGG ++DTASML+EAI YVKFLK VQSLER
Sbjct: 120 VSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLKGHVQSLER 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,747,291
Number of extensions: 164973
Number of successful extensions: 551
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 7
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)