Os08g0108500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor LAX PANICLE.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0108500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Transcription factor LAX PANICLE.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.99 | 0.598 | 3.17 | -0.211 | 0.254 | -0.657 | -0.284 | 0.516 | -0.204 | 7.53 | 19 | 777 | -- | -- |
| 161.87 | 0.593 | 3.18 | -0.204 | 0.261 | -0.881 | -0.279 | -- | -0.218 | 7.32 | 18.7 | 735 | -- | -- |
| 162.17 | 0.593 | 3.17 | -0.209 | 0.252 | -0.639 | -- | 0.618 | -0.202 | 7.76 | 18.98 | 749 | -- | -- |
| 162.12 | 0.593 | 3.18 | -0.229 | 0.264 | -0.896 | -- | -- | -0.213 | 7.45 | 18.59 | 720 | -- | -- |
| 165.51 | 0.599 | 3.17 | -0.188 | -- | -0.724 | -- | 0.544 | -0.189 | -- | 18.95 | 746 | -- | -- |
| 172.02 | 0.615 | 3.2 | -0.51 | 0.316 | -- | -0.434 | -- | -0.327 | 8.22 | -- | -- | -- | -- |
| 172.59 | 0.615 | 3.2 | -0.523 | 0.316 | -- | -- | -- | -0.327 | 8.36 | -- | -- | -- | -- |
| 165.24 | 0.599 | 3.19 | -0.23 | -- | -1.06 | -- | -- | -0.215 | -- | 18.33 | 553 | -- | -- |
| 163.43 | 0.595 | 3.17 | -- | 0.243 | -1 | -- | -- | -0.179 | 7.44 | 18.63 | 694 | -- | -- |
| 178.14 | 0.624 | 3.21 | -0.521 | -- | -- | -- | -- | -0.323 | -- | -- | -- | -- | -- |
| 179.79 | 0.627 | 3.19 | -- | 0.314 | -- | -- | -- | -0.269 | 8.48 | -- | -- | -- | -- |
| 166.47 | 0.601 | 3.18 | -- | -- | -1.13 | -- | -- | -0.177 | -- | 18.46 | 611 | -- | -- |
| 185.29 | 0.635 | 3.2 | -- | -- | -- | -- | -- | -0.266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.25 | temperature | 20 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 4 | 161.86 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 6 | 162.00 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 9 | 162.07 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 1 |
| 12 | 162.10 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 3 |
| 30 | 162.38 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 16 |
| 38 | 162.46 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 1 |
| 43 | 162.49 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 20 |
| 46 | 162.50 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 63 | 162.64 | temperature | 20 | 720 | < th | dose dependent | sin | 13 | NA |
| 91 | 162.77 | radiation | 30 | 30 | > th | dose independent | rect. | 9 | 3 |
| 139 | 162.96 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 143 | 162.98 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 22 |
| 161 | 163.06 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 163 | 163.07 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 7 |
| 181 | 163.13 | radiation | 30 | 720 | < th | dose independent | rect. | 18 | 15 |
| 187 | 163.17 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 11 |
| 206 | 163.30 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 22 |
| 211 | 163.32 | humidity | 90 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 221 | 163.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 5 |
| 259 | 163.50 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 266 | 163.54 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 280 | 163.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 298 | 163.59 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 20 |
| 301 | 163.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 317 | 163.64 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 332 | 163.69 | radiation | 30 | 10 | < th | dose independent | rect. | 4 | 12 |
| 334 | 163.69 | radiation | 10 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 355 | 163.74 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 365 | 163.76 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 393 | 163.78 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 22 |
| 394 | 163.78 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 406 | 163.80 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 433 | 163.86 | humidity | 90 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 438 | 163.86 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 472 | 163.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 491 | 163.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 516 | 163.98 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 517 | 163.99 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 2 |
| 521 | 164.00 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 533 | 164.02 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 545 | 164.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 546 | 164.05 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 548 | 164.05 | humidity | 90 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 554 | 164.05 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 5 | 6 |
| 566 | 164.06 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 601 | 164.11 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 607 | 164.12 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 614 | 164.14 | radiation | 10 | 720 | < th | dose independent | rect. | 21 | 9 |
| 667 | 164.20 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 679 | 164.23 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 695 | 164.25 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 713 | 164.28 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 753 | 164.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 760 | 164.33 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 761 | 164.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 764 | 164.34 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 853 | 164.45 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 873 | 164.48 | humidity | 90 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 895 | 164.53 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 899 | 164.53 | humidity | 90 | 1440 | > th | dose dependent | rect. | 13 | 7 |
| 906 | 164.54 | humidity | 90 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 908 | 164.55 | radiation | 30 | 30 | > th | dose independent | sin | 8 | NA |
| 933 | 164.59 | radiation | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 936 | 164.60 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 955 | 164.63 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 996 | 164.70 | humidity | 90 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 999 | 164.70 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 10 |