BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0108500 Os08g0108500|J065122A22
(306 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225 129 2e-30
AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242 117 6e-27
AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199 116 2e-26
AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232 115 4e-26
AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374 96 2e-20
AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913 58 6e-09
AT5G43175.1 | chr5:17334261-17335234 FORWARD LENGTH=224 49 3e-06
>AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225
Length = 224
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 72/93 (77%)
Query: 130 LGAMKEMMYRIAAMQPVDIDPATIKKPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXX 189
LGAMKEMMY+IAAMQ VDIDPAT+KKP+RRNVRISDDPQSVAA
Sbjct: 92 LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151
Query: 190 VPGGTKMDTASMLDEAIRYIKFLKRQVQELQHQ 222
VPGGTKMDTASMLDEAIRY+KFLKRQ++ L +
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184
>AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242
Length = 241
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 66/93 (70%)
Query: 130 LGAMKEMMYRIAAMQPVDIDPATIKKPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXX 189
+ AM+EM++RIA MQP+ IDP +K P+RRNVRIS DPQSVAA
Sbjct: 95 MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 154
Query: 190 VPGGTKMDTASMLDEAIRYIKFLKRQVQELQHQ 222
VPGGTKMDTASMLDEAI Y+KFLK+QVQ L+ Q
Sbjct: 155 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEQ 187
>AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199
Length = 198
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 63/89 (70%)
Query: 132 AMKEMMYRIAAMQPVDIDPATIKKPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXXVP 191
AMKEM Y IA MQPVDIDPAT+ KP RRNVRISDDPQ+V A VP
Sbjct: 87 AMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146
Query: 192 GGTKMDTASMLDEAIRYIKFLKRQVQELQ 220
GG KMDTASMLDEAIRY KFLKRQV+ LQ
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175
>AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232
Length = 231
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%)
Query: 130 LGAMKEMMYRIAAMQPVDIDPATIKKPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXX 189
+ AM+EM++RIA MQP+ IDP ++K P+R+NVRIS DPQSVAA
Sbjct: 92 MAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRL 151
Query: 190 VPGGTKMDTASMLDEAIRYIKFLKRQVQELQ 220
VPGGTKMDTASMLDEAI Y+KFLK+QVQ L+
Sbjct: 152 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182
>AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374
Length = 373
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 61/92 (66%)
Query: 130 LGAMKEMMYRIAAMQPVDIDPATIKKPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXX 189
+ MKEM+YR AA +PV+ ++KP+R+NV+IS DPQ+VAA
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301
Query: 190 VPGGTKMDTASMLDEAIRYIKFLKRQVQELQH 221
VPGGTKMDTASMLDEA Y+KFL+ QV+ L++
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALEN 333
>AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913
Length = 912
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 34/62 (54%)
Query: 155 KPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIRYIKFLKR 214
K R +S DPQSVAA VPGG KMDT SMLDEAI Y+KFLK
Sbjct: 35 KRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKA 94
Query: 215 QV 216
Q+
Sbjct: 95 QI 96
>AT5G43175.1 | chr5:17334261-17335234 FORWARD LENGTH=224
Length = 223
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 142 AMQPVDIDPATIKKPRRRNVRISDDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASM 201
A+ V ++K+ + N I+ DPQS+ A VP GTK+D ++M
Sbjct: 117 ALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTM 176
Query: 202 LDEAIRYIKFLKRQVQELQHQ 222
L++A+ Y+KFL+ Q++ L +
Sbjct: 177 LEDAVHYVKFLQLQIKLLSSE 197
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,068,837
Number of extensions: 37141
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 7
Length of query: 306
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 208
Effective length of database: 8,419,801
Effective search space: 1751318608
Effective search space used: 1751318608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)