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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0707500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor LAX PANICLE.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0309) R2 : 0.45
β1 : -1.54 (0.113) R2dD : 0.231 R2D : 0.181
β2 : 1.04 (0.0745) R2dC : 0.236 R2C : 0.215
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.301 (0.0661) R2dN8 : 0.0336 R2N8 : -0.00675
σ : 0.582
deviance : 154.41
__
_____
C
peak time of C : 1.67
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.82 0.554 4.09 -1.8 1.12 0.467 -1.35 -0.365 -0.422 1.65 20.57 216 -- --
139.27 0.55 4.08 -1.73 1.13 0.507 -1.24 -- -0.407 1.65 20.41 209 -- --
145.22 0.561 4.08 -1.71 1.13 0.506 -- 0.00424 -0.415 1.76 20.51 206 -- --
145.19 0.561 4.07 -1.69 1.13 0.502 -- -- -0.402 1.74 20.56 206 -- --
209.89 0.675 4.08 -1.84 -- 0.486 -- -0.877 -0.411 -- 19.4 790 -- --
148.26 0.571 4.06 -1.58 1.04 -- -1.24 -- -0.308 1.57 -- -- -- --
154.41 0.582 4.05 -1.54 1.04 -- -- -- -0.301 1.67 -- -- -- --
211.58 0.677 4.06 -1.74 -- 0.657 -- -- -0.393 -- 19.43 784 -- --
215.56 0.688 4.02 -- 1.05 0.166 -- -- -0.157 1.6 20.56 206 -- --
220.7 0.694 4.04 -1.5 -- -- -- -- -0.278 -- -- -- -- --
216.79 0.689 4.01 -- 1.02 -- -- -- -0.13 1.62 -- -- -- --
236.24 0.716 3.96 -- -- -0.678 -- -- 0.0716 -- 26.4 40 -- --
279.75 0.781 4 -- -- -- -- -- -0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.37 temperature 20 270 < th dose independent rect. 22 11
7 136.01 temperature 20 720 < th dose independent rect. 22 1
9 136.33 temperature 20 270 > th dose independent sin 9 NA
12 136.54 temperature 20 270 < th dose independent sin 9 NA
24 136.91 temperature 20 270 > th dose independent rect. 16 20
26 136.93 temperature 20 270 > th dose independent rect. 17 18
29 137.00 temperature 20 270 > th dose independent rect. 18 15
54 137.56 temperature 20 270 < th dose independent rect. 21 18
91 137.91 temperature 20 270 > th dose independent rect. 23 12
96 138.06 wind 5 4320 > th dose independent rect. 18 5
97 138.06 wind 5 4320 < th dose independent rect. 18 5
212 138.90 temperature 20 270 < th dose independent rect. 14 19
240 139.00 wind 5 4320 > th dose dependent rect. 18 2
273 139.16 humidity 90 14400 < th dose dependent rect. 21 2
352 139.49 temperature 20 90 > th dose independent rect. 2 23
355 139.50 temperature 20 720 > th dose independent rect. 17 9
365 139.53 humidity 60 43200 > th dose independent rect. 17 2
391 139.59 temperature 20 270 > th dose independent rect. 24 23
406 139.63 temperature 20 270 > th dose independent no NA NA
416 139.66 humidity 60 43200 < th dose independent rect. 17 2
448 139.73 temperature 20 270 < th dose independent no NA NA
547 140.01 wind 9 4320 > th dose independent rect. 16 1
557 140.03 radiation 1 1440 < th dose independent rect. 9 3
563 140.03 radiation 1 1440 < th dose dependent rect. 9 3
565 140.04 temperature 20 270 < th dose dependent rect. 23 9
566 140.04 temperature 25 90 < th dose dependent rect. 23 12
575 140.08 temperature 20 270 > th dose independent rect. 6 23
597 140.15 radiation 1 1440 < th dose independent rect. 11 1
601 140.15 radiation 1 1440 < th dose dependent rect. 11 1
604 140.16 wind 3 4320 > th dose dependent rect. 18 5
608 140.17 temperature 20 270 < th dose independent rect. 3 23
610 140.18 humidity 60 43200 < th dose independent rect. 17 7
615 140.19 radiation 10 14400 < th dose independent rect. 17 13
619 140.20 radiation 1 1440 < th dose independent rect. 9 1
626 140.20 radiation 1 1440 < th dose dependent rect. 9 1
633 140.21 wind 9 4320 > th dose dependent rect. 16 1
640 140.23 wind 3 4320 > th dose dependent rect. 18 7
644 140.24 temperature 20 90 > th dose independent rect. 9 23
653 140.26 temperature 20 270 < th dose independent rect. 5 23
681 140.31 humidity 90 1440 < th dose dependent rect. 3 2
693 140.33 humidity 90 14400 < th dose dependent rect. 20 10
694 140.34 radiation 10 14400 < th dose independent rect. 17 3
703 140.35 wind 1 43200 < th dose independent rect. 22 1
714 140.36 radiation 10 14400 < th dose independent rect. 17 10
741 140.39 humidity 70 14400 > th dose dependent rect. 21 1
742 140.39 temperature 30 270 < th dose dependent rect. 21 10
760 140.42 wind 1 43200 < th dose independent rect. 4 13
762 140.42 wind 1 43200 < th dose independent rect. 3 16
775 140.44 radiation 1 1440 > th dose independent rect. 11 1
796 140.47 wind 1 43200 > th dose independent rect. 22 1
805 140.49 radiation 1 1440 > th dose independent rect. 9 1
823 140.52 temperature 20 270 < th dose independent rect. 1 23
859 140.58 radiation 10 43200 < th dose dependent rect. 17 12
886 140.63 radiation 10 43200 < th dose dependent rect. 17 2
892 140.64 radiation 10 43200 < th dose dependent rect. 17 5
893 140.64 radiation 10 43200 < th dose dependent rect. 17 10
904 140.65 radiation 10 43200 < th dose dependent rect. 17 8
944 140.71 radiation 1 1440 > th dose independent rect. 9 3
957 140.73 humidity 60 43200 < th dose independent rect. 15 20
968 140.75 humidity 60 43200 > th dose independent rect. 15 20
976 140.77 radiation 20 14400 > th dose dependent rect. 16 2
996 140.78 radiation 40 43200 < th dose dependent rect. 17 2