BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0707500 Os01g0707500|AK100208
(393 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374 127 1e-29
AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242 105 4e-23
AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232 105 5e-23
AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225 91 9e-19
AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199 86 3e-17
AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913 63 3e-10
AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351 50 2e-06
AT1G66470.1 | chr1:24795326-24796598 FORWARD LENGTH=299 48 8e-06
>AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374
Length = 373
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 241 EPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXX 300
EPD EA+AQ+KEMIYRAAA RPV+ G E +KP+RKNV+IS+DPQTVAA
Sbjct: 236 EPDAEAIAQMKEMIYRAAAFRPVNFGLEIV-EKPKRKNVKISTDPQTVAARQRRERISEK 294
Query: 301 XXXXQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETL 340
Q LVPGG KMDTASMLDEAA+YLKFL++QV+ LE L
Sbjct: 295 IRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334
>AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242
Length = 241
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 247 MAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQK 306
MA ++EMI+R A M+P+H+ EA P+R+NVRIS DPQ+VAA Q+
Sbjct: 95 MAAMREMIFRIAVMQPIHIDPEAVK-PPKRRNVRISKDPQSVAARHRRERISERIRILQR 153
Query: 307 LVPGGNKMDTASMLDEAASYLKFLKSQVQKLE 338
LVPGG KMDTASMLDEA Y+KFLK QVQ LE
Sbjct: 154 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185
>AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232
Length = 231
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 243 DMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXX 302
D MA ++EMI+R A M+P+H+ E+ P+RKNVRIS DPQ+VAA
Sbjct: 88 DNANMAAMREMIFRIAVMQPIHIDPESV-KPPKRKNVRISKDPQSVAARHRRERISERIR 146
Query: 303 XXQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLE 338
Q+LVPGG KMDTASMLDEA Y+KFLK QVQ LE
Sbjct: 147 ILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182
>AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225
Length = 224
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 250 VKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQKLVP 309
+KEM+Y+ AAM+ V + A KP+R+NVRIS DPQ+VAA Q+LVP
Sbjct: 95 MKEMMYKIAAMQSVDID-PATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVP 153
Query: 310 GGNKMDTASMLDEAASYLKFLKSQVQKLET 339
GG KMDTASMLDEA Y+KFLK Q++ L
Sbjct: 154 GGTKMDTASMLDEAIRYVKFLKRQIRLLNN 183
>AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199
Length = 198
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 250 VKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQKLVP 309
+KEM Y A M+PV + A KP R+NVRIS DPQTV A +++VP
Sbjct: 88 MKEMQYMIAVMQPVDIDP-ATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146
Query: 310 GGNKMDTASMLDEAASYLKFLKSQVQKLE 338
GG KMDTASMLDEA Y KFLK QV+ L+
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175
>AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913
Length = 912
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 267 TEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQKLVPGGNKMDTASMLDEAASY 326
+E K R +S+DPQ+VAA Q +VPGG KMDT SMLDEA SY
Sbjct: 29 SETGNTKRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISY 88
Query: 327 LKFLKSQV 334
+KFLK+Q+
Sbjct: 89 VKFLKAQI 96
>AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351
Length = 350
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 266 GTEAAADKPRRKNVRI----SSDPQTVAAXXXXXXXXXXXXXXQKLVPGGNKMDTASMLD 321
GT AA + R K +R ++DP ++A Q+LVP GNK D ASMLD
Sbjct: 126 GTVAAPPQSRTK-IRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLD 184
Query: 322 EAASYLKFLKSQVQKL 337
E Y+KFL+ QV+ L
Sbjct: 185 EIIDYVKFLQLQVKVL 200
>AT1G66470.1 | chr1:24795326-24796598 FORWARD LENGTH=299
Length = 298
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 284 DPQTVAAXXXXXXXXXXXXXXQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLET 339
DPQ++AA Q+LVP G K+D +ML++A SY+KFL+ QV+ L T
Sbjct: 204 DPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLAT 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,360,838
Number of extensions: 97175
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 8
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)