BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0707500 Os01g0707500|AK100208
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0707500 Similar to Transcription factor LAX PANICLE 404 e-113
Os01g0566800 Basic helix-loop-helix dimerisation region bHL... 146 2e-35
Os05g0541400 Similar to Transcription factor LAX PANICLE 121 8e-28
Os08g0108500 Similar to Transcription factor LAX PANICLE 101 9e-22
Os09g0455300 Similar to INDEHISCENT protein 99 7e-21
Os08g0471401 97 1e-20
>Os01g0707500 Similar to Transcription factor LAX PANICLE
Length = 393
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/393 (56%), Positives = 222/393 (56%)
Query: 1 METFGWAGGGQLMHHDDIYLPRSVGCGRPFELDDAFLGACFXXXXXXXXXXXXXXXXXXX 60
METFGWAGGGQLMHHDDIYLPRSVGCGRPFELDDAFLGACF
Sbjct: 1 METFGWAGGGQLMHHDDIYLPRSVGCGRPFELDDAFLGACFGAQLQCDGGVGGGDGGGCL 60
Query: 61 XXTSGFGAVAGDPLGLLCSGDVFASVXXXXXXXXXXXXXXXXXXFSRNQLXXXXXXXXXX 120
TSGFGAVAGDPLGLLCSGDVFASV FSRNQL
Sbjct: 61 QGTSGFGAVAGDPLGLLCSGDVFASVAEGAGGAHDDGLLDAALAFSRNQLGGAACDGSDG 120
Query: 121 XXVSNGAMLXXXXXXXXXXXXXXXXXXXXXXXXXXDAEVVSPTSTMSAATQSLHPKRKLY 180
VSNGAML DAEVVSPTSTMSAATQSLHPKRKLY
Sbjct: 121 GAVSNGAMLSSYSGTTGGNISSGESNNYSGGGGGYDAEVVSPTSTMSAATQSLHPKRKLY 180
Query: 181 DDHHHXXXXXXXXXXXXXXXXXXXTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 240
DDHHH TTG Y
Sbjct: 181 DDHHHPAGIAAAAAAPPLAPCPRPTTGAVAAKRRASTSATSITFGHQPHHHHAGATTAGY 240
Query: 241 EPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXX 300
EPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAA
Sbjct: 241 EPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSDR 300
Query: 301 XXXXQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETLGXXXXXSKLPQQYYXXXXXX 360
QKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETLG SKLPQQYY
Sbjct: 301 LRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETLGTTTTTSKLPQQYYSGNINS 360
Query: 361 XXXXXXFLGFAANNNTIXXXXXXXXXXXXTKLL 393
FLGFAANNNTI TKLL
Sbjct: 361 SNNHHGFLGFAANNNTISAGYANSNAGNATKLL 393
>Os01g0566800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 496
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 81/101 (80%)
Query: 240 YEPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXX 299
YEPD EA+AQVKEMIYRAAAMRPV LG E A ++PRR+NVRISSDPQTVAA
Sbjct: 341 YEPDTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISE 400
Query: 300 XXXXXQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETL 340
QKLVPGG KMDTASMLDEAA+YL+FLKSQ+++L+TL
Sbjct: 401 RLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTL 441
>Os05g0541400 Similar to Transcription factor LAX PANICLE
Length = 414
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 76/111 (68%), Gaps = 11/111 (9%)
Query: 240 YEPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRR-----------KNVRISSDPQTV 288
YEPD EA+AQVKEM+YRAA MRPV LG A+A P KNVRISSDPQTV
Sbjct: 249 YEPDTEAIAQVKEMVYRAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRISSDPQTV 308
Query: 289 AAXXXXXXXXXXXXXXQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLET 339
AA Q+LVPGG+KMDTA+MLDEAASYLKFLKSQ++ LET
Sbjct: 309 AARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALET 359
>Os08g0108500 Similar to Transcription factor LAX PANICLE
Length = 306
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 247 MAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQK 306
+ +KEM+YR AAM+PV + A KPRR+NVRIS DPQ+VAA Q+
Sbjct: 130 LGAMKEMMYRIAAMQPVDI-DPATIKKPRRRNVRISDDPQSVAARHRRERISERIRILQR 188
Query: 307 LVPGGNKMDTASMLDEAASYLKFLKSQVQKLE 338
LVPGG KMDTASMLDEA Y+KFLK QVQ+L+
Sbjct: 189 LVPGGTKMDTASMLDEAIRYIKFLKRQVQELQ 220
>Os09g0455300 Similar to INDEHISCENT protein
Length = 236
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 250 VKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQKLVP 309
++EMI+ AA++PV + EA P+R+NVRIS DPQ+VAA Q+LVP
Sbjct: 117 MREMIFHIAALQPVEIDPEAVR-PPKRRNVRISKDPQSVAARLRRERISERIRILQRLVP 175
Query: 310 GGNKMDTASMLDEAASYLKFLKSQVQKLE 338
GG KMDTASMLDEA Y+KFLKSQVQ LE
Sbjct: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
>Os08g0471401
Length = 246
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 248 AQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAAXXXXXXXXXXXXXXQKL 307
A ++EMI+ AA++PV++ E P+R+NVRIS+DPQ+VAA Q+L
Sbjct: 125 AAMREMIFHIAALQPVNIDPETV-RPPKRRNVRISTDPQSVAARMRRERISERIRILQRL 183
Query: 308 VPGGNKMDTASMLDEAASYLKFLKSQVQKLE 338
VPGG KMDTASMLDEA Y+KFLK+QVQ LE
Sbjct: 184 VPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 214
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,252,831
Number of extensions: 175164
Number of successful extensions: 458
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 7
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)