Os01g0566800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os01g0566800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1147.46 | 1.59 | 7.17 | -4.88 | 3.33 | 4.48 | -0.845 | -1.6 | -1.16 | 2.75 | 16.26 | 1926 | 2.91 | -- |
| 1147.29 | 1.58 | 7.13 | -4.62 | 3.32 | 5.04 | -1.21 | -- | -1.09 | 2.44 | 14.54 | 1954 | 2.75 | -- |
| 1149.3 | 1.58 | 7.15 | -4.82 | 3.5 | 4.53 | -- | -1.38 | -1.12 | 2.73 | 16.09 | 1984 | 2.67 | -- |
| 1150.26 | 1.58 | 7.12 | -4.53 | 3.47 | 4.97 | -- | -- | -1.04 | 2.46 | 14.57 | 1992 | 2.68 | -- |
| 1171.33 | 1.59 | 7.15 | -4.51 | -- | 7.05 | -- | -1.19 | -1.03 | -- | -5.468 | 1904 | 6.02 | -- |
| 1551.08 | 1.85 | 6.85 | -2.9 | 4.06 | -- | -0.212 | -- | 0.0229 | 3.6 | -- | -- | -- | -- |
| 1551.21 | 1.84 | 6.84 | -2.9 | 4.06 | -- | -- | -- | 0.0241 | 3.61 | -- | -- | -- | -- |
| 1172.62 | 1.59 | 7.1 | -4.4 | -- | 7.24 | -- | -- | -0.988 | -- | -4.003 | 1901 | 5.97 | -- |
| 1608.05 | 1.87 | 6.93 | -- | 2.84 | 3.65 | -- | -- | -0.183 | 2.19 | 4.932 | 1929 | 3.63 | -- |
| 2467.49 | 2.32 | 6.85 | -2.73 | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
| 1773.07 | 1.97 | 6.77 | -- | 4 | -- | -- | -- | 0.347 | 3.61 | -- | -- | -- | -- |
| 1614.99 | 1.87 | 6.96 | -- | -- | 5.93 | -- | -- | -0.168 | -- | -19.64 | 1948 | 6.45 | -- |
| 2664.27 | 2.41 | 6.78 | -- | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1151.07 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 3 | 1153.26 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 6 | 1154.81 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 8 | 1156.25 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 10 | 1156.93 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 14 | 1158.03 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 15 | 1158.25 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 21 | 1158.66 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 34 | 1159.81 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 54 | 1160.66 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 99 | 1163.17 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 104 | 1163.45 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 109 | 1163.60 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 119 | 1164.12 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 137 | 1164.68 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 141 | 1164.77 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 165 | 1165.49 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 183 | 1165.81 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 208 | 1166.44 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 239 | 1167.12 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 251 | 1167.34 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 258 | 1167.51 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 283 | 1168.13 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 292 | 1168.39 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 343 | 1170.13 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 344 | 1170.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 345 | 1170.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 366 | 1170.76 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 377 | 1171.16 | radiation | 1.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 380 | 1171.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 381 | 1171.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 388 | 1171.63 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 389 | 1171.65 | radiation | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 392 | 1171.66 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 405 | 1171.92 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 408 | 1171.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 426 | 1172.13 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 435 | 1172.21 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 437 | 1172.23 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 462 | 1172.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 487 | 1172.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 490 | 1172.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 496 | 1172.62 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 516 | 1172.83 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 537 | 1173.07 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 543 | 1173.12 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 555 | 1173.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 595 | 1173.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 670 | 1174.32 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 713 | 1174.61 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 10 |
| 714 | 1174.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 719 | 1174.64 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 779 | 1175.42 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 789 | 1175.52 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 806 | 1175.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 807 | 1175.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 817 | 1175.81 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 827 | 1175.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 832 | 1175.96 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 841 | 1176.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 15 |
| 925 | 1176.97 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 932 | 1177.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 7 |