BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0566800 Os01g0566800|J013132P12
(496 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0566800 Basic helix-loop-helix dimerisation region bHL... 464 e-131
Os01g0707500 Similar to Transcription factor LAX PANICLE 151 1e-36
Os05g0541400 Similar to Transcription factor LAX PANICLE 123 3e-28
Os08g0108500 Similar to Transcription factor LAX PANICLE 103 3e-22
Os09g0455300 Similar to INDEHISCENT protein 98 1e-20
Os08g0471401 97 2e-20
>Os01g0566800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 496
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 268/496 (54%), Positives = 268/496 (54%)
Query: 1 VSSATTLTSSIHRSTQLKSNERLATTTTVWMDRGFNEMILSESVWNXXXXXXXXXXXAVV 60
VSSATTLTSSIHRSTQLKSNERLATTTTVWMDRGFNEMILSESVWN AVV
Sbjct: 1 VSSATTLTSSIHRSTQLKSNERLATTTTVWMDRGFNEMILSESVWNGGGGGGDGDGGAVV 60
Query: 61 LPPEVGGVNAVDGSGMTMLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
LPPEVGGVNAVDGSGMTMLER
Sbjct: 61 LPPEVGGVNAVDGSGMTMLERLVLDEALAAAILELQGIQAPGCGGGGGKVAVVPPPTAGD 120
Query: 121 XXXXXXXXXXXXXXXXXXXXDVDADVLXXXXXXXXXXXGAMGMAAEYDXXXXXXXXXXXX 180
DVDADVL GAMGMAAEYD
Sbjct: 121 GGVEAAVAFAAMATGTPAYADVDADVLQRQRQHHHRHQGAMGMAAEYDVAPATPAVTLSA 180
Query: 181 XXXXXXXXXXXXXXXSVDGGGAMDATVFSGIGNXXXXXXXXXXXXXXXXXXXXSQCEXXX 240
SVDGGGAMDATVFSGIGN SQCE
Sbjct: 181 VPPPPPPPAFATAAASVDGGGAMDATVFSGIGNDDVVDAVSATVAMTTATATTSQCERVR 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMSSQDNPLCSLLASNTAGADGGIQIAFX 300
DMSSQDNPLCSLLASNTAGADGGIQIAF
Sbjct: 241 GGGGGGGCGRKQRRPGRKRKAAEPTAAAAAADMSSQDNPLCSLLASNTAGADGGIQIAFS 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXFDXXXXXXXXXXXXXDDPLYEPDTEALAQVKEMIYRAAA 360
FD DDPLYEPDTEALAQVKEMIYRAAA
Sbjct: 301 TSAPASKRAKPSLSSSSSSISFDGRGPGGNCGGGGGDDPLYEPDTEALAQVKEMIYRAAA 360
Query: 361 MRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQKLVPGGAKMDTASM 420
MRPVTLGAEDAGERPRRRNVRISSDPQTVAA VLQKLVPGGAKMDTASM
Sbjct: 361 MRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASM 420
Query: 421 LDEAANYLRFLKSQIRELQTLDRRNYPXXXXXXXXXXXXXXXXXXXPTYNNSNAAMPAFA 480
LDEAANYLRFLKSQIRELQTLDRRNYP PTYNNSNAAMPAFA
Sbjct: 421 LDEAANYLRFLKSQIRELQTLDRRNYPNAAMSINTAAATTMATSSSPTYNNSNAAMPAFA 480
Query: 481 FPETLGCGGGGVEQLI 496
FPETLGCGGGGVEQLI
Sbjct: 481 FPETLGCGGGGVEQLI 496
>Os01g0707500 Similar to Transcription factor LAX PANICLE
Length = 393
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 83/101 (82%)
Query: 341 YEPDTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXX 400
YEPD EA+AQVKEMIYRAAAMRPV LG E A ++PRR+NVRISSDPQTVAA
Sbjct: 240 YEPDMEAMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSD 299
Query: 401 XXXVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTL 441
VLQKLVPGG KMDTASMLDEAA+YL+FLKSQ+++L+TL
Sbjct: 300 RLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETL 340
>Os05g0541400 Similar to Transcription factor LAX PANICLE
Length = 414
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 80/111 (72%), Gaps = 11/111 (9%)
Query: 341 YEPDTEALAQVKEMIYRAAAMRPVTLGA-----------EDAGERPRRRNVRISSDPQTV 389
YEPDTEA+AQVKEM+YRAA MRPVTLG +RPRR+NVRISSDPQTV
Sbjct: 249 YEPDTEAIAQVKEMVYRAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRISSDPQTV 308
Query: 390 AAXXXXXXXXXXXXVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQT 440
AA VLQ+LVPGG+KMDTA+MLDEAA+YL+FLKSQ+ L+T
Sbjct: 309 AARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALET 359
>Os08g0108500 Similar to Transcription factor LAX PANICLE
Length = 306
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 348 LAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQK 407
L +KEM+YR AAM+PV + ++PRRRNVRIS DPQ+VAA +LQ+
Sbjct: 130 LGAMKEMMYRIAAMQPVDIDPATI-KKPRRRNVRISDDPQSVAARHRRERISERIRILQR 188
Query: 408 LVPGGAKMDTASMLDEAANYLRFLKSQIRELQ 439
LVPGG KMDTASMLDEA Y++FLK Q++ELQ
Sbjct: 189 LVPGGTKMDTASMLDEAIRYIKFLKRQVQELQ 220
>Os09g0455300 Similar to INDEHISCENT protein
Length = 236
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 351 VKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQKLVP 410
++EMI+ AA++PV + E A P+RRNVRIS DPQ+VAA +LQ+LVP
Sbjct: 117 MREMIFHIAALQPVEIDPE-AVRPPKRRNVRISKDPQSVAARLRRERISERIRILQRLVP 175
Query: 411 GGAKMDTASMLDEAANYLRFLKSQIRELQ 439
GG KMDTASMLDEA +Y++FLKSQ++ L+
Sbjct: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
>Os08g0471401
Length = 246
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 349 AQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQKL 408
A ++EMI+ AA++PV + E P+RRNVRIS+DPQ+VAA +LQ+L
Sbjct: 125 AAMREMIFHIAALQPVNIDPETV-RPPKRRNVRISTDPQSVAARMRRERISERIRILQRL 183
Query: 409 VPGGAKMDTASMLDEAANYLRFLKSQIRELQ 439
VPGG KMDTASMLDEA +Y++FLK+Q++ L+
Sbjct: 184 VPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 214
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,763,359
Number of extensions: 202099
Number of successful extensions: 488
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 8
Length of query: 496
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 391
Effective length of database: 11,553,331
Effective search space: 4517352421
Effective search space used: 4517352421
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)