BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0566800 Os01g0566800|J013132P12
(496 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374 130 1e-30
AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242 101 1e-21
AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232 100 3e-21
AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225 95 7e-20
AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199 91 1e-18
AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913 67 3e-11
AT5G43175.1 | chr5:17334261-17335234 FORWARD LENGTH=224 53 3e-07
>AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374
Length = 373
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 342 EPDTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXX 401
EPD EA+AQ+KEMIYRAAA RPV G E E+P+R+NV+IS+DPQTVAA
Sbjct: 236 EPDAEAIAQMKEMIYRAAAFRPVNFGLEIV-EKPKRKNVKISTDPQTVAARQRRERISEK 294
Query: 402 XXVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTL 441
VLQ LVPGG KMDTASMLDEAANYL+FL++Q++ L+ L
Sbjct: 295 IRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334
>AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242
Length = 241
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 348 LAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQK 407
+A ++EMI+R A M+P+ + E A + P+RRNVRIS DPQ+VAA +LQ+
Sbjct: 95 MAAMREMIFRIAVMQPIHIDPE-AVKPPKRRNVRISKDPQSVAARHRRERISERIRILQR 153
Query: 408 LVPGGAKMDTASMLDEAANYLRFLKSQIRELQ 439
LVPGG KMDTASMLDEA +Y++FLK Q++ L+
Sbjct: 154 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185
>AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232
Length = 231
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 344 DTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXX 403
D +A ++EMI+R A M+P+ + E + P+R+NVRIS DPQ+VAA
Sbjct: 88 DNANMAAMREMIFRIAVMQPIHIDPESV-KPPKRKNVRISKDPQSVAARHRRERISERIR 146
Query: 404 VLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQ 439
+LQ+LVPGG KMDTASMLDEA +Y++FLK Q++ L+
Sbjct: 147 ILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182
>AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225
Length = 224
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 348 LAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQK 407
L +KEM+Y+ AAM+ V + ++P+RRNVRIS DPQ+VAA +LQ+
Sbjct: 92 LGAMKEMMYKIAAMQSVDIDPATV-KKPKRRNVRISDDPQSVAARHRRERISERIRILQR 150
Query: 408 LVPGGAKMDTASMLDEAANYLRFLKSQIREL 438
LVPGG KMDTASMLDEA Y++FLK QIR L
Sbjct: 151 LVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181
>AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199
Length = 198
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 351 VKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQKLVP 410
+KEM Y A M+PV + +P RRNVRIS DPQTV A +L+++VP
Sbjct: 88 MKEMQYMIAVMQPVDIDPATVP-KPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146
Query: 411 GGAKMDTASMLDEAANYLRFLKSQIRELQ 439
GGAKMDTASMLDEA Y +FLK Q+R LQ
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175
>AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913
Length = 912
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 368 AEDAGERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQKLVPGGAKMDTASMLDEAANY 427
+E + R +S+DPQ+VAA +LQ +VPGGAKMDT SMLDEA +Y
Sbjct: 29 SETGNTKRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISY 88
Query: 428 LRFLKSQIRELQTL 441
++FLK+QI Q +
Sbjct: 89 VKFLKAQIWYHQNM 102
>AT5G43175.1 | chr5:17334261-17335234 FORWARD LENGTH=224
Length = 223
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 373 ERPRRRNVRISSDPQTVAAXXXXXXXXXXXXVLQKLVPGGAKMDTASMLDEAANYLRFLK 432
+R + N I+SDPQ++ A LQ LVP G K+D ++ML++A +Y++FL+
Sbjct: 129 KRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188
Query: 433 SQIRELQTLD 442
QI+ L + D
Sbjct: 189 LQIKLLSSED 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,054,918
Number of extensions: 108683
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 7
Length of query: 496
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,282,721
Effective search space: 3255109353
Effective search space used: 3255109353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)