BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0455300 Os09g0455300|AK070458
(236 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242 132 2e-31
AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232 129 2e-30
AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225 107 6e-24
AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199 98 4e-21
AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374 97 7e-21
AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913 60 1e-09
AT5G43175.1 | chr5:17334261-17335234 FORWARD LENGTH=224 53 2e-07
AT1G27740.1 | chr1:9654753-9655806 FORWARD LENGTH=259 51 6e-07
AT5G37800.1 | chr5:15036197-15037574 FORWARD LENGTH=308 49 2e-06
AT4G33880.1 | chr4:16239566-16241052 REVERSE LENGTH=353 49 3e-06
>AT5G67060.1 | chr5:26766276-26767001 FORWARD LENGTH=242
Length = 241
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 68/89 (76%)
Query: 116 AMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
AMREMIF IA +QP+ IDPEAV+PPKRRNVRISKDPQSVAA VP
Sbjct: 97 AMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRLVP 156
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GGTKMDTASMLDEAIHYVKFLK QVQSLE
Sbjct: 157 GGTKMDTASMLDEAIHYVKFLKKQVQSLE 185
>AT3G50330.1 | chr3:18657423-18658118 REVERSE LENGTH=232
Length = 231
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 68/89 (76%)
Query: 116 AMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
AMREMIF IA +QP+ IDPE+V+PPKR+NVRISKDPQSVAA VP
Sbjct: 94 AMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRLVP 153
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GGTKMDTASMLDEAIHYVKFLK QVQSLE
Sbjct: 154 GGTKMDTASMLDEAIHYVKFLKKQVQSLE 182
>AT5G09750.1 | chr5:3026401-3027075 REVERSE LENGTH=225
Length = 224
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 62/89 (69%)
Query: 116 AMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
AM+EM++ IAA+Q V+IDP V+ PKRRNVRIS DPQSVAA VP
Sbjct: 94 AMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVP 153
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GGTKMDTASMLDEAI YVKFLK Q++ L
Sbjct: 154 GGTKMDTASMLDEAIRYVKFLKRQIRLLN 182
>AT4G00120.1 | chr4:42601-43197 REVERSE LENGTH=199
Length = 198
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 57/89 (64%)
Query: 116 AMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVP 175
AM+EM + IA +QPV+IDP V P RRNVRIS DPQ+V A VP
Sbjct: 87 AMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146
Query: 176 GGTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175
>AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374
Length = 373
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 59/88 (67%)
Query: 117 MREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVPG 176
M+EMI+ AA +PV E V PKR+NV+IS DPQ+VAA VPG
Sbjct: 245 MKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPG 304
Query: 177 GTKMDTASMLDEAIHYVKFLKSQVQSLE 204
GTKMDTASMLDEA +Y+KFL++QV++LE
Sbjct: 305 GTKMDTASMLDEAANYLKFLRAQVKALE 332
>AT5G01310.1 | chr5:125304-128960 FORWARD LENGTH=913
Length = 912
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 34/59 (57%)
Query: 142 RRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKSQV 200
R +S DPQSVAA VPGG KMDT SMLDEAI YVKFLK+Q+
Sbjct: 38 RSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQI 96
>AT5G43175.1 | chr5:17334261-17335234 FORWARD LENGTH=224
Length = 223
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 126 ALQPVEIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASM 185
AL V ++++ + N I+ DPQS+ A VP GTK+D ++M
Sbjct: 117 ALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTM 176
Query: 186 LDEAIHYVKFLKSQVQSL 203
L++A+HYVKFL+ Q++ L
Sbjct: 177 LEDAVHYVKFLQLQIKLL 194
>AT1G27740.1 | chr1:9654753-9655806 FORWARD LENGTH=259
Length = 258
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 136 AVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKF 195
+V+ R + DPQS+ A VP GTK+D ++ML+EA+HYVKF
Sbjct: 162 SVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKF 221
Query: 196 LKSQVQSL 203
L+ Q++ L
Sbjct: 222 LQLQIKLL 229
>AT5G37800.1 | chr5:15036197-15037574 FORWARD LENGTH=308
Length = 307
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 131 EIDPEAVRPPKRRNVRISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAI 190
+I P+A PK DPQS+AA VP GTK+D +ML++AI
Sbjct: 199 KIKPKATTSPK--------DPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAI 250
Query: 191 HYVKFLKSQVQSL 203
YVKFL+ QV+ L
Sbjct: 251 GYVKFLQVQVKVL 263
>AT4G33880.1 | chr4:16239566-16241052 REVERSE LENGTH=353
Length = 352
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 150 DPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKSQVQSL 203
DPQS+ A VP GTK+D ++ML+EA+HYVKFL+ Q++ L
Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,328,429
Number of extensions: 87124
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 10
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)