Os07g0588400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os07g0588400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.5 | 0.237 | 2.98 | 0.463 | 0.0681 | 0.53 | 0.114 | -4.88 | 0.0665 | 9.69 | 29.9 | 308 | -- | -- |
| 27.48 | 0.246 | 3.04 | 0.0329 | 0.0756 | -0.053 | -0.228 | -- | 0.0295 | 5.86 | 29.9 | 308 | -- | -- |
| 25.55 | 0.235 | 2.98 | 0.463 | 0.0678 | 0.528 | -- | -4.85 | 0.0665 | 9.42 | 29.9 | 307 | -- | -- |
| 27.54 | 0.246 | 3.04 | 0.0328 | 0.0804 | -0.0476 | -- | -- | 0.0307 | 7.47 | 29.9 | 308 | -- | -- |
| 25.81 | 0.237 | 2.99 | 0.465 | -- | 0.546 | -- | -4.84 | 0.0652 | -- | 29.91 | 307 | -- | -- |
| 27.59 | 0.246 | 3.04 | 0.039 | 0.0635 | -- | -0.248 | -- | 0.0286 | 5.86 | -- | -- | -- | -- |
| 27.62 | 0.246 | 3.04 | 0.0385 | 0.0756 | -- | -- | -- | 0.0301 | 8.15 | -- | -- | -- | -- |
| 27.88 | 0.246 | 3.04 | 0.0451 | -- | 0.0421 | -- | -- | 0.0327 | -- | 29.33 | 423 | -- | -- |
| 27.57 | 0.246 | 3.04 | -- | 0.081 | -0.0505 | -- | -- | 0.0271 | 7.41 | 29.9 | 308 | -- | -- |
| 27.94 | 0.247 | 3.04 | 0.0391 | -- | -- | -- | -- | 0.031 | -- | -- | -- | -- | -- |
| 27.66 | 0.246 | 3.04 | -- | 0.0758 | -- | -- | -- | 0.0259 | 8.11 | -- | -- | -- | -- |
| 27.91 | 0.246 | 3.04 | -- | -- | 0.0541 | -- | -- | 0.0225 | -- | 32.4 | 546 | -- | -- |
| 27.98 | 0.247 | 3.04 | -- | -- | -- | -- | -- | 0.0267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.03 | humidity | 70 | 90 | < th | dose independent | rect. | 17 | 1 |
| 2 | 22.03 | humidity | 70 | 30 | < th | dose independent | rect. | 17 | 3 |
| 17 | 22.08 | humidity | 70 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 30 | 22.16 | wind | 1 | 30 | < th | dose independent | rect. | 17 | 1 |
| 41 | 22.16 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 153 | 23.30 | wind | 1 | 10 | < th | dose dependent | rect. | 1 | 2 |
| 166 | 23.59 | wind | 7 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 170 | 23.59 | wind | 7 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 244 | 24.16 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 20 |
| 263 | 24.21 | wind | 1 | 10 | < th | dose independent | rect. | 1 | 1 |
| 281 | 24.44 | wind | 1 | 10 | < th | dose independent | rect. | 15 | 11 |
| 295 | 24.58 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 4 |
| 303 | 24.63 | humidity | 50 | 270 | < th | dose dependent | rect. | 14 | 4 |
| 325 | 24.67 | humidity | 50 | 270 | < th | dose independent | rect. | 14 | 3 |
| 404 | 24.85 | humidity | 50 | 270 | < th | dose dependent | sin | 12 | NA |
| 442 | 24.95 | humidity | 50 | 270 | < th | dose independent | sin | 12 | NA |
| 451 | 25.00 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 2 |
| 476 | 25.09 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 20 |
| 477 | 25.12 | wind | 1 | 10 | < th | dose dependent | sin | 17 | NA |
| 504 | 25.22 | temperature | 25 | 30 | > th | dose independent | rect. | 17 | 1 |
| 514 | 25.29 | temperature | 30 | 270 | < th | dose independent | sin | 15 | NA |
| 560 | 25.33 | temperature | 30 | 270 | > th | dose independent | sin | 14 | NA |
| 565 | 25.33 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 20 |
| 596 | 25.38 | humidity | 50 | 270 | > th | dose independent | sin | 12 | NA |
| 715 | 25.69 | wind | 1 | 10 | < th | dose independent | sin | 17 | NA |
| 747 | 25.73 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 749 | 25.73 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 758 | 25.75 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 763 | 25.76 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |