Os07g0182200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008).
FiT-DB / Search/ Help/ Sample detail
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Os07g0182200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.32 | 0.212 | 11.4 | 0.0216 | 0.467 | -0.135 | -0.295 | 1.11 | -0.349 | 21.9 | 9.419 | 1528 | -- | -- |
| 21.97 | 0.218 | 11.4 | 0.0307 | 0.467 | -0.138 | -0.167 | -- | -0.333 | 22 | 9.8 | 1699 | -- | -- |
| 20.61 | 0.211 | 11.4 | 0.0202 | 0.464 | -0.135 | -- | 1.12 | -0.348 | 21.9 | 9.365 | 1415 | -- | -- |
| 22 | 0.218 | 11.4 | 0.0272 | 0.465 | -0.166 | -- | -- | -0.35 | 22.1 | 10 | 1708 | -- | -- |
| 27.41 | 0.244 | 11.4 | -0.0673 | -- | -0.339 | -- | 0.704 | -0.418 | -- | 18.15 | 985 | -- | -- |
| 22.49 | 0.222 | 11.4 | 0.0313 | 0.447 | -- | -0.185 | -- | -0.329 | 21.8 | -- | -- | -- | -- |
| 22.62 | 0.223 | 11.4 | 0.0381 | 0.447 | -- | -- | -- | -0.329 | 21.8 | -- | -- | -- | -- |
| 25.46 | 0.236 | 11.4 | 0.0363 | -- | 0.285 | -- | -- | -0.312 | -- | 3.026 | 1095 | -- | -- |
| 22.07 | 0.219 | 11.4 | -- | 0.468 | -0.169 | -- | -- | -0.351 | 22.1 | 9.79 | 1708 | -- | -- |
| 34.55 | 0.275 | 11.4 | 0.0427 | -- | -- | -- | -- | -0.33 | -- | -- | -- | -- | -- |
| 22.66 | 0.223 | 11.4 | -- | 0.447 | -- | -- | -- | -0.334 | 21.8 | -- | -- | -- | -- |
| 25.49 | 0.236 | 11.4 | -- | -- | 0.285 | -- | -- | -0.316 | -- | 3.026 | 1095 | -- | -- |
| 34.6 | 0.275 | 11.4 | -- | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 10 | 19.16 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 17 | 19.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 52 | 19.53 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 63 | 19.57 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 66 | 19.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 68 | 19.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 76 | 19.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 80 | 19.65 | wind | 1 | 30 | > th | dose independent | rect. | 7 | 23 |
| 82 | 19.66 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 95 | 19.68 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 118 | 19.76 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 119 | 19.77 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 131 | 19.80 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 136 | 19.82 | radiation | 10 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 143 | 19.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 6 |
| 154 | 19.86 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 170 | 19.88 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 193 | 19.92 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 215 | 19.96 | radiation | 1 | 90 | < th | dose independent | rect. | 21 | 22 |
| 238 | 19.98 | radiation | 1 | 90 | < th | dose dependent | rect. | 22 | 21 |
| 239 | 19.99 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 255 | 19.99 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 273 | 20.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 281 | 20.01 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 290 | 20.02 | radiation | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 294 | 20.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 296 | 20.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 301 | 20.04 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 7 | 21 |
| 302 | 20.04 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 308 | 20.05 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 10 |
| 315 | 20.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 318 | 20.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 324 | 20.06 | radiation | 1 | 1440 | > th | dose dependent | sin | 11 | NA |
| 333 | 20.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 403 | 20.10 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 434 | 20.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 4 |
| 473 | 20.14 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 484 | 20.14 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 492 | 20.15 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 509 | 20.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 513 | 20.16 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 553 | 20.18 | radiation | 10 | 1440 | < th | dose independent | sin | 11 | NA |
| 576 | 20.19 | wind | 1 | 30 | < th | dose independent | rect. | 23 | 3 |
| 630 | 20.21 | humidity | 90 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 643 | 20.21 | wind | 3 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 658 | 20.22 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 13 |
| 686 | 20.23 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 703 | 20.24 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 2 |
| 710 | 20.24 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 719 | 20.25 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 781 | 20.27 | humidity | 90 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 812 | 20.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 819 | 20.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 841 | 20.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 11 |
| 885 | 20.30 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 889 | 20.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 892 | 20.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 903 | 20.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 904 | 20.30 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 906 | 20.30 | wind | 1 | 30 | < th | dose dependent | rect. | 23 | 3 |
| 912 | 20.30 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 942 | 20.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 980 | 20.32 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 7 |