BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0182200 Os07g0182200|AK066623
(136 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0182200 Similar to Phytochrome-interacting factor 3 (P... 254 2e-68
Os03g0797600 Similar to Helix-loop-helix protein homolog 234 2e-62
Os02g0795800 118 1e-27
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 107 3e-24
Os06g0193400 Similar to Helix-loop-helix protein homolog 102 6e-23
Os06g0184000 75 1e-14
>Os07g0182200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 136
Score = 254 bits (648), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/136 (91%), Positives = 124/136 (91%)
Query: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRXXXXXXXXXXXXDIPISVK 60
MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSR DIPISVK
Sbjct: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPISVK 60
Query: 61 GEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQ 120
GEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQ
Sbjct: 61 GEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQ 120
Query: 121 HSQDGHSVKPEPNTPS 136
HSQDGHSVKPEPNTPS
Sbjct: 121 HSQDGHSVKPEPNTPS 136
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 234 bits (597), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/136 (83%), Positives = 118/136 (86%)
Query: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRXXXXXXXXXXXXDIPISVK 60
MRALQ+LVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSR DIP+SVK
Sbjct: 159 MRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLSVK 218
Query: 61 GEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQ 120
GEASDSG QQIWEKWSTDGTE+QVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQ
Sbjct: 219 GEASDSGGNQQIWEKWSTDGTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYDTQ 278
Query: 121 HSQDGHSVKPEPNTPS 136
+QDG VK EPNTPS
Sbjct: 279 QTQDGQPVKHEPNTPS 294
>Os02g0795800
Length = 463
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 80/123 (65%), Gaps = 11/123 (8%)
Query: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRXXXXXXXXXXXXDI----- 55
M+ALQ+LVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR ++
Sbjct: 260 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLVANMSSESN 319
Query: 56 ------PISVKGEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMP 109
S GEA++ S + TE+QVAKLMEED+G+AMQ+LQ K LC+MP
Sbjct: 320 GNGNATSSSGNGEAANGSSNGDNNGGGTLRVTEQQVAKLMEEDMGSAMQYLQGKGLCLMP 379
Query: 110 ISL 112
ISL
Sbjct: 380 ISL 382
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 80/129 (62%), Gaps = 13/129 (10%)
Query: 1 MRALQDLVPNTNK---TDRAAMLDEILDYVKFLRLQVK----------VLSMSRXXXXXX 47
M+ALQ+LVPN NK TD+A+MLDEI+DYVKFL+LQVK VLSMSR
Sbjct: 276 MKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVKASTYTKLLIHVLSMSRLGGAAA 335
Query: 48 XXXXXXDIPISVKGEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCM 107
D+ +G + +G S TE+QVAKLMEED+G AMQ+LQ K LC+
Sbjct: 336 VAPLVADMSSEGRGGGAANGGAPAAAGSDSLTVTEQQVAKLMEEDMGTAMQYLQGKGLCL 395
Query: 108 MPISLAMAI 116
MPISLA AI
Sbjct: 396 MPISLASAI 404
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRXXXXXXXXXXXXDIPISVK 60
M+ LQ LVPN+NK D+A+MLDEI+DYVKFL+LQVKVLSMSR +
Sbjct: 342 MKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECH 401
Query: 61 GEASDSGS-----KQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMA 115
S S S + + + E++V KLME I +AMQ+LQ+K LC+MPI+LA A
Sbjct: 402 SNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASA 461
Query: 116 IYDTQHSQDGHSVKPE 131
I + + ++ PE
Sbjct: 462 ISNQKGMAAAAAIPPE 477
>Os06g0184000
Length = 430
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 40/41 (97%)
Query: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSR 41
M++LQ+LVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMSR
Sbjct: 240 MKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 280
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,875,964
Number of extensions: 108958
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 6
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 150 (62.4 bits)