BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0557100 Os08g0557100|AK101214
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0557100 Similar to Nucleic acid-binding protein precursor 362 e-101
Os09g0565200 Similar to Nucleic acid-binding protein precursor 310 5e-85
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 201 2e-52
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 194 3e-50
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 156 8e-39
Os09g0279500 Similar to Plastid-specific 30S ribosomal prot... 140 4e-34
Os07g0158300 Similar to RNA binding protein 130 4e-31
Os09g0565150 113 1e-25
Os08g0117100 RNA-binding region RNP-1 (RNA recognition moti... 110 5e-25
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 104 3e-23
AK108879 104 4e-23
Os04g0591000 RNA-binding region RNP-1 (RNA recognition moti... 97 5e-21
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 97 9e-21
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 96 1e-20
Os07g0615400 Similar to Oligouridylate binding protein 95 4e-20
Os08g0483200 RNA-binding region RNP-1 (RNA recognition moti... 94 7e-20
AK120313 92 2e-19
AK119744 92 3e-19
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 91 6e-19
Os08g0520300 Similar to Oligouridylate binding protein 90 9e-19
AK111046 90 1e-18
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 90 1e-18
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 88 4e-18
Os08g0320100 RNA-binding region RNP-1 (RNA recognition moti... 87 6e-18
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 87 9e-18
Os04g0504800 Similar to Poly(A)-binding protein 86 1e-17
Os04g0449900 Similar to RNA Binding Protein 47 86 2e-17
Os09g0462700 Similar to RNA Binding Protein 47 86 2e-17
Os01g0945800 RNA-binding region RNP-1 (RNA recognition moti... 85 3e-17
Os03g0278500 Polyadenylate binding protein, human types 1, ... 85 4e-17
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 84 8e-17
Os03g0569900 Similar to RNA Binding Protein 45 82 2e-16
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 80 8e-16
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 79 2e-15
Os03g0174100 Similar to RNA Binding Protein 45 79 2e-15
Os03g0836200 Similar to RNA-binding protein RZ-1 78 3e-15
Os07g0602600 Similar to RNA binding protein 78 4e-15
Os09g0115400 Similar to Poly(A)-binding protein 77 6e-15
Os04g0620700 RNA-binding region RNP-1 (RNA recognition moti... 77 1e-14
AK110071 77 1e-14
Os05g0223300 Similar to RNA-binding protein 76 2e-14
Os10g0321700 Similar to Ribonucleoprotein like protein 75 2e-14
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 75 3e-14
Os03g0123200 RNA-binding region RNP-1 (RNA recognition moti... 74 8e-14
Os08g0314800 Similar to Poly(A)-binding protein 73 1e-13
Os04g0625800 Similar to RNA Binding Protein 45 73 1e-13
Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment) 72 2e-13
Os06g0589700 Similar to Poly(A)-binding protein (Fragment) 72 3e-13
Os09g0123200 Paraneoplastic encephalomyelitis antigen famil... 72 3e-13
Os07g0187300 RNA-binding region RNP-1 (RNA recognition moti... 71 4e-13
Os05g0114500 RNA-binding region RNP-1 (RNA recognition moti... 70 7e-13
AK063637 70 1e-12
Os05g0223500 70 1e-12
Os08g0192900 RNA-binding region RNP-1 (RNA recognition moti... 70 1e-12
Os01g0614500 RNA-binding region RNP-1 (RNA recognition moti... 67 8e-12
Os03g0681900 Similar to RGP-3 (Fragment) 65 3e-11
Os01g0766700 65 4e-11
Os10g0151800 RNA-binding region RNP-1 (RNA recognition moti... 64 5e-11
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI
Sbjct: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
Query: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG
Sbjct: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRGF 194
EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRGF
Sbjct: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRGF 194
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 310 bits (794), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 147/180 (81%), Positives = 169/180 (93%), Gaps = 1/180 (0%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
AKVYVGNLPYD+DSE LAQLFEQAG+VEV+EVIYNRET +SRGFGFVTMST+EEA+KA+E
Sbjct: 143 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 202
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
M +RYD++GRLL VN+AAPRG+RVERPPRQF P+FR YVGNLPWQVDDSRL+QLFSEHG+
Sbjct: 203 MFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGK 262
Query: 136 VVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER-PQRGF 194
VV+A VVYDRE+GRSRGFGFV+MA++EELDDAI+ALDGQ LDGR LRVNVA ER P+RGF
Sbjct: 263 VVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEERPPRRGF 322
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 129/184 (70%), Gaps = 6/184 (3%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
KV+VGNLP+ VDS LA LFEQAG VE+ EV+Y+R+TG+SRGFGFVTMST EEA A+E
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 77 LNRYDINGRLLNVNRAAP--RGSRVERPPR----QFAPAFRAYVGNLPWQVDDSRLLQLF 130
N Y GR L VN P R R PR F + + YVGNL W VD+S L LF
Sbjct: 141 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 200
Query: 131 SEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERP 190
SE G V++A V+YDRESGRSRGFGFV+ S EE+++AIS LDG +LDGR +RV VA +P
Sbjct: 201 SEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKP 260
Query: 191 QRGF 194
+R F
Sbjct: 261 RRQF 264
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 106 FAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELD 165
FA + +VGNLP+ VD ++L LF + G V VVYDR++GRSRGFGFV+M++ EE
Sbjct: 76 FAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAG 135
Query: 166 DAISALDGQELDGRPLRVNVAAERPQRGF 194
A+ +G GRPLRVN P+ F
Sbjct: 136 AAVEQFNGYTFQGRPLRVNSGPPPPRDDF 164
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 128/178 (71%), Gaps = 4/178 (2%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
+V+VGNLP+ VDS LA LFEQAG VE+ EVIY++ TG+SRGFGFVTMS++EE + A+E
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 77 LNRYDINGRLLNVNRAAP--RGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
N Y ++GR L VN P R +R PR A R YVGNL W VD++ L LFS G
Sbjct: 147 FNGYILDGRSLRVNSGPPPPREQSSQRAPR--GEANRVYVGNLSWGVDNAALANLFSGEG 204
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
EV+ A V+YDRESGRSRGFGFV+ S EE+++A+S LDG ++DGR +RV VA +P R
Sbjct: 205 EVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPR 262
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 57/86 (66%)
Query: 106 FAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELD 165
F+ R +VGNLP+ VD ++L LF + G V V+YD+ +GRSRGFGFV+M+S EE++
Sbjct: 82 FSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVE 141
Query: 166 DAISALDGQELDGRPLRVNVAAERPQ 191
A+ +G LDGR LRVN P+
Sbjct: 142 AAVEQFNGYILDGRSLRVNSGPPPPR 167
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K+Y GNLPY+ DS LA + + E+ EV+Y+R TG+SRGF FVTMSTIE+ ++ I+
Sbjct: 145 TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 204
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
L+ +GR + VN A ++ P + +VGNL W V L ++F + G
Sbjct: 205 NLDGSLYSGRTMRVNFADKPKPKLPLYPET---EHKLFVGNLSWTVTSEMLTEMFQKCGN 261
Query: 136 VVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
VV A V+YD E+GRSRG+GFV ++KEE+D+A+S+L+G EL+GR +RVN+A
Sbjct: 262 VVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 312
>Os09g0279500 Similar to Plastid-specific 30S ribosomal protein 2, chloroplast
precursor (PSRP- 2)
Length = 245
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
K+YVGN+P V ++ LA +F G VE AEV++++ TG+SR FGFVTMST EEA+ AIE
Sbjct: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
Query: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAF-----RAYVGNLPWQVDDSRLLQLFS 131
LN ++ GR + VN ++R + P F + YVGNL V L FS
Sbjct: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFS 190
Query: 132 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
E GEV++A+V + +S+G+GFV+ +S+EE+ A+S + EL+G+P+RVN A
Sbjct: 191 EKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 109 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 168
A + YVGN+P V + L +F++HG V A V++D+ +GRSR FGFV+M++ EE + AI
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
Query: 169 SALDGQELDGRPLRVNV 185
+L+ E+ GR ++VNV
Sbjct: 129 ESLNETEVGGRKIKVNV 145
>Os07g0158300 Similar to RNA binding protein
Length = 364
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
+++VGNLPY + S ++Q F +AG V+ ++IY++ T +SRGF FVTM+T EEA AI+M
Sbjct: 135 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQM 194
Query: 77 LNRYDINGRLLNVNRA-APRG-------SRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQ 128
N + GR VN PRG + R R+ F+ Y GNL W V L
Sbjct: 195 FNGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRA 254
Query: 129 LFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAE 188
F +++A V+++R+SGRSRGFGFVS + E+ A+ ALDG EL+GRPLR+++A +
Sbjct: 255 AFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAEQ 314
Query: 189 RPQRG 193
P G
Sbjct: 315 NPTAG 319
>Os09g0565150
Length = 611
Score = 113 bits (282), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 92/160 (57%), Gaps = 34/160 (21%)
Query: 59 FGFVTMSTIEEADKAIEMLNRYDING-----RLLNVNRAAPRGSRVERPPRQ-------- 105
FG VTM+T++ K +++ +D G LL V A E+ PRQ
Sbjct: 462 FGVVTMTTVQ---KPADIVAAFDKRGFLDLHPLLAVEFA-------EQQPRQEWILTEAA 511
Query: 106 ----------FAPA-FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFG 154
F+P F YVGNL W VD RLL+ F EHG V+ A VV DR++GRSRGFG
Sbjct: 512 LAIAPTTVHSFSPKDFSIYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCDRQTGRSRGFG 571
Query: 155 FVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRGF 194
FVSMA+ E DD I++L+GQ +DGRP+RV+ A +P+ G+
Sbjct: 572 FVSMATLREPDDVIASLNGQIMDGRPMRVSFAKWQPRLGY 611
Score = 72.4 bits (176), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVGNL +DVD L + F + G V VA+V+ +R+TG+SRGFGFV+M+T+ E D I L
Sbjct: 529 IYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCDRQTGRSRGFGFVSMATLREPDDVIASL 588
Query: 78 NRYDINGRLLNVNRA 92
N ++GR + V+ A
Sbjct: 589 NGQIMDGRPMRVSFA 603
>Os08g0117100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 319
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 10/184 (5%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
+++V NLP D + L +LF+ G V E+ + ETG SRG GFVTM ++ EA A+
Sbjct: 135 ELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNA 194
Query: 77 LNRYDINGRLLNVNRAAPRGSR------VERPPRQ---FAPAFRAYVGNLPWQVDDSRLL 127
L+ +D++GR + V ++ S+ PP + F + YVGN+ W V+ L
Sbjct: 195 LDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELR 254
Query: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
+ FS+ G VV+ ++ DR+ GR R +GF+S AS EEL+ A+ LD GR + V A
Sbjct: 255 EYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALK-LDNTHFHGRNILVRQAH 313
Query: 188 ERPQ 191
E Q
Sbjct: 314 EERQ 317
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
A YVGNL V E L +LF QAG V V +R T +G+GFV + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
+LN + G+ + VN+A+ ++ ++GNL VD+ L FS G
Sbjct: 85 ILNMIKLYGKPIRVNKASQDKKSLDV-------GANLFIGNLDPDVDEKLLYDTFSAFGV 137
Query: 136 VV-NASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
+V N ++ D E+G SRGFGFVS S E D AI A++ Q L RP+ V+ A ++ +G
Sbjct: 138 IVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYAYKKDTKG 196
>AK108879
Length = 670
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 12/188 (6%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
V++ NL V E L LFE G ++ A ++ E+G+SRGFGF+ E+A KA+
Sbjct: 224 FTNVFIKNLDEAVTDEELQALFEPFGEIQSA-ILQRDESGKSRGFGFINFVEHEDAQKAV 282
Query: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAP----------AFRAYVGNLPWQVDDS 124
E LN ++NG+ + V RA + R E RQF YV NL V +
Sbjct: 283 EALNDVEVNGKRIFVGRAQKKSERTEELRRQFEALKLERMSKFHGVNLYVKNLDEMVTED 342
Query: 125 RLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVN 184
+L F+ G + + V+ D E G SRGFGFV ++ EE AIS ++G+ ++G+PL V
Sbjct: 343 QLRMEFTPFGSISSLRVMVD-EKGVSRGFGFVCFSAPEEAARAISEMNGRMVNGKPLYVA 401
Query: 185 VAAERPQR 192
+A R +R
Sbjct: 402 LAQRRDER 409
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+ +++ NL +D++ L F G + +V+ + + G SRGFGFV T E AD AI
Sbjct: 131 VGNIFIKNLDKTIDNKALHDTFSAFGNILSCKVVTD-DQGASRGFGFVHYETREAADLAI 189
Query: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
+ +N +NG + V R R+ A ++ NL V D L LF G
Sbjct: 190 DKVNGMLLNGIKVFVGHHISRKERISHLEELKAQFTNVFIKNLDEAVTDEELQALFEPFG 249
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
E+ +A + D ESG+SRGFGF++ E+ A+ AL+ E++G+ + V A ++ +R
Sbjct: 250 EIQSAILQRD-ESGKSRGFGFINFVEHEDAQKAVEALNDVEVNGKRIFVGRAQKKSER 306
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVG L DV L ++F Q G V V + T +S G+ +V + + ++AIE L
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFR------AYVGNLPWQVDDSRLLQLFS 131
N I G+ + + Q PA R ++ NL +D+ L FS
Sbjct: 106 NYALIKGQPCRLMWS------------QRDPALRRSGVGNIFIKNLDKTIDNKALHDTFS 153
Query: 132 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 191
G +++ VV D + G SRGFGFV ++E D AI ++G L+G + V R +
Sbjct: 154 AFGNILSCKVVTD-DQGASRGFGFVHYETREAADLAIDKVNGMLLNGIKVFVGHHISRKE 212
Query: 192 R 192
R
Sbjct: 213 R 213
>Os04g0591000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 291
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 19/176 (10%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
K+YV N+P+ + + +LF Q G V+ EVI ++ + GF FVTM+T EEA A+E
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKK-GFAFVTMATAEEAAAAVEK 139
Query: 77 LNRYDINGRLLNVNRAAP---------RGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLL 127
LN D+ GR + V + G+ +ER + YV NLPW+ +
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILER--------HKLYVSNLPWKARAPNMK 191
Query: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
+ FS+ + +A VV+D SG+S G+GFVS +KEE + A++ LDG+EL GRP+R+
Sbjct: 192 EFFSKFNPL-SAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRL 246
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K++VG + ++ E ++ FE+ G + + ++ ++ T RGFGFVT S DK +E
Sbjct: 66 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE 125
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRA-YVGNLPWQVDDSRLLQLFSEHG 134
+ + I+GR + V R PR E + P R +VG LP + + L + FS +G
Sbjct: 126 --DEHVIDGRTVEVKRTVPR----EEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYG 179
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
++V ++ D +GRSRGFGFV+ S++ ++ IS ++L G+ + + A + G
Sbjct: 180 KIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGG 238
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 96.3 bits (238), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVGNLP V S L +LF G + + V+ + TG S+G+GFV S A +AI+ +
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 78 NRYDINGRLLNVNRAA-PRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEV 136
N + G L V P + P + + YV NL ++ RL+ LF GEV
Sbjct: 355 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEV 414
Query: 137 VNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
NA V D +G S+G+GFV +S +A+ L+G+ +DGR + V V+
Sbjct: 415 TNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSG 465
Score = 86.7 bits (213), Expect = 9e-18, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 19/195 (9%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+AK+YV NL ++++ L LF G V A+V + TG S+G+GFV S+ A +A+
Sbjct: 387 MAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV 446
Query: 75 EMLNRYDINGRLLNV---------------NRAAPRGSRVERPPR----QFAPAFRAYVG 115
LN ++GR + V + + R S VE P + YV
Sbjct: 447 IHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVC 506
Query: 116 NLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQE 175
N+P +D +L++LF G++ +A VV D ++ ++G+GF+ E AI+A++G
Sbjct: 507 NMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 566
Query: 176 LDGRPLRVNVAAERP 190
+ G + V VA P
Sbjct: 567 VGGEMIIVRVAGLSP 581
Score = 73.6 bits (179), Expect = 9e-14, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+A +YVG +P + + LF G V A + + + +G V A AI
Sbjct: 685 MANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAAI 738
Query: 75 EMLNRYDINGRLLNVNRA-------APRG---SRVERPPRQFAPAFRAYVGNLPWQVDDS 124
+ L+ Y I G +L V A A +G S++ + YV +LP V++
Sbjct: 739 DHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNE 798
Query: 125 RLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVN 184
RL+ LF G++ A VV +R +G S+GFGFV A A++ ++G LDG L V
Sbjct: 799 RLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVR 858
Query: 185 VAAERP 190
+A P
Sbjct: 859 IAGVHP 864
Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
++ +YV N+P +D++ L +LF G + A V+ + +T ++G+GF+ + E A KAI
Sbjct: 500 MSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAI 559
Query: 75 EMLNRYDINGRLLNVNRA--APRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSE 132
+N + G ++ V A +P S Q R Y+ NLP + +++ LF+
Sbjct: 560 AAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAP 619
Query: 133 HGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
G++ V+ + E + V A A+ +DG ++G+ L V
Sbjct: 620 FGQITK--VLMNLE------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV 662
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
VYVGN+ V L ++F+ G+VE ++I ++ +GFV A +I L
Sbjct: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVV 137
N I G+L+ VN A G R + F +VG+L +V DS L FS +
Sbjct: 123 NGKQIFGQLIRVNWAYASGQREDTTDH-----FNIFVGDLSPEVTDSALFAFFSGYSSCS 177
Query: 138 NASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
+A V++D+++GRSRG+GFVS ++++ AI+ L+GQ L R +R N A + G
Sbjct: 178 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNG 233
>Os08g0483200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 269
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 22 NLPYDVDSEGLAQLFEQAG-VVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRY 80
N+P+D ++ + LF + G VV+V +YN + ++RG FVTM + EEA A+ LN
Sbjct: 79 NIPWDCTADDMRALFGKHGSVVDVELSMYN--STRNRGLAFVTMGSEEEALSALNHLNST 136
Query: 81 DINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNAS 140
+N R + V+ R + P P +VGNL W+V L +LF+ V +
Sbjct: 137 TLNDRTIKVDFTRSRKKQYVVPSAPM-PKHSVFVGNLTWRVRSRHLRELFASTPGVQSVE 195
Query: 141 VVYDRESGR-SRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
VV+ S R S G+GFVS +SKE + AIS +G +L GR + V
Sbjct: 196 VVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINV 239
>AK120313
Length = 409
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K++VG + ++ E ++ FE+ G + + ++ ++ T RG GFVT S DK +E
Sbjct: 78 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPSVIDKVLE 137
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRA-YVGNLPWQVDDSRLLQLFSEHG 134
+ + I+GR + V R PR E + P R +VG LP + + L + FS +G
Sbjct: 138 --DEHVIDGRTVEVKRTVPR----EEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYG 191
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
++V ++ D +GRSRGFGFV+ S++ ++ IS ++L G+ + + A + G
Sbjct: 192 KIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGG 250
>AK119744
Length = 746
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
V++ NL + +D++ L F G + +V + E G S+G+GFV T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVV 137
N +N + + V P+ R+ + A YV N+ V D +LF +HG++
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEVKANFTNIYVKNIDLDVTDDEFRELFEKHGDIT 256
Query: 138 NASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
+AS+ D E G+SRGFGFV+ E A+ AL+ E G+ L V A ++ +R
Sbjct: 257 SASIARD-EQGKSRGFGFVNYIKHEAASAAVEALNDTEFRGQKLYVGRAQKKHER 310
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+YV N+ DV + +LFE+ G + A + + E G+SRGFGFV E A A+
Sbjct: 228 FTNIYVKNIDLDVTDDEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAASAAV 286
Query: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPA----------FRAYVGNLPWQVDDS 124
E LN + G+ L V RA + R E +Q+ A Y+ NL VDD
Sbjct: 287 EALNDTEFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 125 RLLQLFSEHGEVVNASVVYD 144
+L +F+ G + +A V+ D
Sbjct: 347 KLRDMFTPFGTITSAKVMRD 366
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
A +YVG L V L +LF G V V + T +S G+ +V ++ E+ +KA+E
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFR------AYVGNLPWQVDDSRLLQL 129
LN I G+ + + Q PA R ++ NL +D+ L
Sbjct: 108 ELNYTVIKGKPCRIMWS------------QRDPALRKTGQGNVFIKNLDHAIDNKALHDT 155
Query: 130 FSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER 189
F+ G +++ V D E G S+G+GFV + E ++AI ++G L+ + +V V
Sbjct: 156 FAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHI 212
Query: 190 PQR 192
P++
Sbjct: 213 PKK 215
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 56/80 (70%)
Query: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
+ +VG L W +D L + F+ G+V A V+ DRESGRSRGFGFVS A+ ++ A+ A
Sbjct: 38 KLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDA 97
Query: 171 LDGQELDGRPLRVNVAAERP 190
+DG+EL+GR +RVN A ERP
Sbjct: 98 MDGKELEGRSIRVNFANERP 117
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
VYVGN+ +V L ++F+ +G+VE ++I ++ FGFV A AI L
Sbjct: 75 VYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 130
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVV 137
+ I G+ + VN A R + + F +VG+L +V+D+ L FS +
Sbjct: 131 HGRHICGQAIKVNWAYASTQREDT-----SGHFHIFVGDLSSEVNDATLYACFSAYPSCS 185
Query: 138 NASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAE 188
+A V++D ++GRSRG+GFVS +++E + AI+ + G+ L R +R N A +
Sbjct: 186 DARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATK 236
>AK111046
Length = 231
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
+R +VG L W DD L FS +GE++++ ++ DRE+GRSRGFGFV+ +S++ + DAI
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 170 ALDGQELDGRPLRVNVAAER 189
++G+ELDGR + VN A R
Sbjct: 68 GMNGKELDGRNITVNEAQSR 87
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
+ +VG L + D+ L F+ +G+V+ A ++ DRE+GRSRGFGF++ AS EE AI+A
Sbjct: 32 KLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITA 91
Query: 171 LDGQELDGRPLRVNVAAERP 190
LDG++LDGR +RVN A ER
Sbjct: 92 LDGKDLDGRNIRVNTANERT 111
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
+K++VG L Y D + L F G V A++I +RETG+SRGFGF+T ++ EEA AI
Sbjct: 31 SKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAIT 90
Query: 76 MLNRYDINGRLLNVNRAAPR 95
L+ D++GR + VN A R
Sbjct: 91 ALDGKDLDGRNIRVNTANER 110
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
+R +VG L W DD L FS +GE++++ ++ DRE+GRSRGFGFV+ +S++ + DAI
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIE 67
Query: 170 ALDGQELDGRPLRVNVAAER 189
++G+ELDGR + VN A R
Sbjct: 68 GMNGKELDGRNITVNEAQSR 87
>Os08g0320100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 350
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
AK+++G LP D + F + G + A ++ +R T + RGFGF+T + D+ IE
Sbjct: 15 AKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIE 74
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
+ + ING+ + + R P+G+ P + F + +VG LP + + + FS+ G+
Sbjct: 75 --DNHVINGKEVEIKRTIPKGAA---PLKDFKTK-KIFVGGLPSALKEDEFKEFFSKFGK 128
Query: 136 VVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
VV ++ D + RSRGFGFV +++ +D+ + A G +D +V + P++
Sbjct: 129 VVEHEIIRDHSTNRSRGFGFVVFDAEKTVDELL-AKKGNMIDLNGSQVEIKKAEPKK 184
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
+R +VG L W DD L FS GE++ + ++ DRE+GRSRGFGFV+ +S++ + DAI
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIE 67
Query: 170 ALDGQELDGRPLRVNVAAER 189
++G+ELDGR + VN A R
Sbjct: 68 GMNGKELDGRNITVNEAQSR 87
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 12/185 (6%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
V+V NL E L ++F G + A ++ + G+SR FGF+ + ++A +A+E L
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVEEL 278
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFR----------AYVGNLPWQVDDSRLL 127
N IN + V RA + R R+F + + Y+ NL + D +L
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
+LFS +G++ + ++ D +G S+G GFV+ +++EE A++ ++G+ + G+PL V A
Sbjct: 339 ELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 397
Query: 188 ERPQR 192
+ R
Sbjct: 398 RKEDR 402
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVG+L V L +LF QAG V V + + +S G+ +V + +A +A+E+L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVV 137
N +NG+ + V + P + + + ++ NL +D L FS G ++
Sbjct: 101 NFAPLNGKPIRVMYSN------RDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNIL 154
Query: 138 NASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
+ V D E G+S+GFGFV E AI +L+G ++ +P+ V
Sbjct: 155 SCKVATD-EMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 6/173 (3%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
++VG+L Y +D L F +G V +VI NR+TGQS G+GFV + A+KA++
Sbjct: 67 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNF 126
Query: 78 NRYDI--NGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFS-EHG 134
+ + R +N A+ + + A + +VG+L V D L++LF+ ++
Sbjct: 127 TGHVMPNTDRPFKLNWAS---YSMGEKRSEVASDYSIFVGDLAADVTDEMLMELFANKYR 183
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
V A V+ D +GRSRG+GFV + A++ ++G RP+R+ A
Sbjct: 184 SVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPAT 236
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
++VG+L Y +D L F G V +VI N++TGQS G+GFV + A+K +E
Sbjct: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
Query: 78 NRYDI--NGRLLNVNRAA-PRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSE-H 133
+ + + +N A+ G R A +VG+L V+D+ LL+ FS+ +
Sbjct: 177 AGHIMPNTDQPFRINWASFSMGDRRS----DIASDHSIFVGDLASDVNDTTLLETFSKRY 232
Query: 134 GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
V A VV D +GRS+G+GFV E A++ ++G RP+R+ A R G
Sbjct: 233 SSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSG 292
>Os01g0945800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 363
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K+ V +P+DVD+EGL + + G ++ V+ R +G+SRGFG+VT S+ ++A +E
Sbjct: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
+ + R L V A P+ + ++ A R +V +P VD+S + F +GE
Sbjct: 63 C--EHVLGNRTLEVKIATPKEEMKSQGSKK---ATRIFVARIPQSVDESMFRRHFEAYGE 117
Query: 136 VVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER------ 189
+ + + + S RG GF++ S E +D + D ELDG + V+ A +
Sbjct: 118 ITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRATPKDEEVRY 175
Query: 190 -PQRG 193
P RG
Sbjct: 176 PPSRG 180
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 12/185 (6%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+Y+ NL D+ E + F Q G+V ++ I R+ G S+GFGFV+ E A +A E +
Sbjct: 218 LYMKNLDDDITEELIKLKFSQYGLV-ISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESM 276
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQF----------APAFRAYVGNLPWQVDDSRLL 127
N + + L V RA + R + R + Y+ N+ +V D L
Sbjct: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
Query: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
+ F+E G + +A ++ D E G S+GFGFV + EE A+S + G G+PL V +A
Sbjct: 337 ERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
Query: 188 ERPQR 192
+ +R
Sbjct: 396 RKEER 400
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+ V+V NL VD+ L +LF + G + +V N E G SRG+GFV + E AD +I
Sbjct: 125 VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASI 183
Query: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
+ LN GR L+V + R ++ Y+ NL + + + FS++G
Sbjct: 184 QNLNNSHFCGRQLHVATFIKKSERSTNNDDKYT---NLYMKNLDDDITEELIKLKFSQYG 240
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
V++ ++ R+ G S+GFGFVS + E A +++G L + L V A ++ +R
Sbjct: 241 LVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAER 297
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 13/178 (7%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVG+L V E L ++F + G + V + T S +G+V + +A A+E L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 78 NR---YDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
N D R++ NR P + + +V NL VD+ L +LF + G
Sbjct: 100 NHSLILDKPIRVMWSNR---------DPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFG 150
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
++++ V + E G SRG+GFV A +E D +I L+ GR L V ++ +R
Sbjct: 151 DILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSER 207
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
K++VG LP D + F Q G + + ++ ++ T Q RGFGF+T S D+ ++
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEV 136
+ ++ NG+ + + R P+ S + + + +VG LP + + F ++G V
Sbjct: 84 I--HEFNGKQVEIKRTIPKDSVQSKDFK----TKKIFVGGLPQALTEDDFKHFFQKYGPV 137
Query: 137 VNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
V+ ++ D ++ RSRGFGF+ +S + +DD ++ +G +D +V + P++
Sbjct: 138 VDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLA--NGNMIDLAGAKVEIKKAEPKK 191
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+++G+L + ++ L F QAG + A++I N++TGQ G+GF+ + A++ ++
Sbjct: 69 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 128
Query: 78 NRYDI-NGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEV 136
N + NG + A G+ +R + +VG+L V D L F H +
Sbjct: 129 NGQMMPNGNQVFKLNWATSGAGEKR--GDDGSDYTIFVGDLASDVTDLILQDTFKAHYQS 186
Query: 137 VN-ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER 189
V A VV+DR +GRS+G+GFV +E A++ ++GQ RP+R+ A+ +
Sbjct: 187 VKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYCSSRPMRIGPASNK 240
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 98/188 (52%), Gaps = 19/188 (10%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K++VG + ++ D + L + F + G V A ++ +R TG++RGFGFV + A++
Sbjct: 6 GKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVT- 64
Query: 76 MLNRYDINGRLLNVNRAAPR----------GSRVERPPRQFAPA--FRAYVGNLPWQVDD 123
++++ I+GR++ +A PR GS + P P + +VG L V +
Sbjct: 65 -MDKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSP----GPGRTRKIFVGGLASNVTE 119
Query: 124 SRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
+ F + G + + V+YD + R RGFGF++ S++ +D A+ + EL+G+ + V
Sbjct: 120 VEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEV 178
Query: 184 NVAAERPQ 191
A + Q
Sbjct: 179 KRAVPKEQ 186
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 96/183 (52%), Gaps = 13/183 (7%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K+++G + +D + + L + F++ G V A ++ +R TG++RGFGF+ + A++ I
Sbjct: 6 GKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVI- 64
Query: 76 MLNRYDINGRLLNVNRAAPR---------GSRVERPPRQFAPAFRAYVGNLPWQVDDSRL 126
+ ++ I+GR++ +A PR G P + + +VG L V ++
Sbjct: 65 -MEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGP-SRTKKIFVGGLASTVTEADF 122
Query: 127 LQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
+ F + G + + V+YD + R RGFGF++ S++ +D A+ EL+G+ + V A
Sbjct: 123 RKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTF-HELNGKMVEVKRA 181
Query: 187 AER 189
+
Sbjct: 182 VPK 184
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 2/177 (1%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+++G+L Y D L F G ++ ++I N+ T G+GF+ + E A+K ++
Sbjct: 18 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 77
Query: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFS-EHGEV 136
N + G S ER P P +VG+L V D L + F + V
Sbjct: 78 NGTQMPGTEHTFRLNWASFSSGERRPDA-GPDHSIFVGDLAPDVTDYLLQETFRVSYPSV 136
Query: 137 VNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
A VV D +GRS+G+GFV A + E + A++ ++G RP+R++ A + G
Sbjct: 137 KGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTG 193
>Os03g0836200 Similar to RNA-binding protein RZ-1
Length = 205
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
+R ++GNL W D L F + G + A VV+D+ SGRSRGFGFV+ K+ ++DAI
Sbjct: 7 YRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIE 66
Query: 170 ALDGQELDGRPLRVNVAAERPQ 191
++G +LDGR + V+ A +PQ
Sbjct: 67 GMNGLDLDGRAITVDKA--QPQ 86
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
+ ++GNL + E L F + G + A+V++++ +G+SRGFGFVT + + AIE
Sbjct: 8 RCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEG 67
Query: 77 LNRYDINGRLLNVNRAAPRGSRVER 101
+N D++GR + V++A P+G +R
Sbjct: 68 MNGLDLDGRAITVDKAQPQGPGRDR 92
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 66/107 (61%), Gaps = 8/107 (7%)
Query: 84 GRLLNVNRAAPRGSRVERPPRQF----APAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNA 139
GR++N A R + V P + + +VG L + DD+ L +FS +G+V+ A
Sbjct: 5 GRVVN----ALRRTSVSSNPSLLQAVRCMSSKLFVGGLSYATDDTTLKDVFSHYGDVLEA 60
Query: 140 SVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
++ DR++G+S+G+GF++ S EE A++A+DG++L GR +RV+ A
Sbjct: 61 RIIIDRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDLQGRIVRVSTA 107
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 12/185 (6%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
VYV NL + + L ++F + G + A V+ G+S+ FGFV + ++A +A++ L
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSA-VVMREGDGRSKCFGFVNFESPDDAAQAVQEL 279
Query: 78 NRYDINGRLLNVNRAAPRGSR-------VERPPRQFAPAFR---AYVGNLPWQVDDSRLL 127
N + + V RA + R E+ ++ A ++ Y+ NL VDD +L
Sbjct: 280 NGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLR 339
Query: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
+LF+E+G + + V+ D +G SRG GFV+ S E+ A++ ++ + + +PL V +A
Sbjct: 340 ELFAEYGTITSCKVMRD-SNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQ 398
Query: 188 ERPQR 192
+ R
Sbjct: 399 RKEDR 403
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVG+L V L +F Q G V V + T +S G+ +V S+ +A +A+EML
Sbjct: 42 LYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEML 101
Query: 78 NRYDING---RLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
N ING R++ NR P + + ++ NL +D+ L F G
Sbjct: 102 NFTPINGKPIRIMYSNR---------DPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG 152
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
+++ V D SG S+G+GFV E AI L+G ++ + + V
Sbjct: 153 NILSCKVATD-ASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYV 200
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
A +++ NL +D++ L F G + +V + +G+S+G+GFV E A AI+
Sbjct: 128 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAAQAAID 186
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPA----FRAYVGNLPWQVDDSRLLQLFS 131
LN +N + + V G + + R +P YV NL + L ++F
Sbjct: 187 KLNGMLMNDKKVYV------GPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFG 240
Query: 132 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 191
+ G + +A VV GRS+ FGFV+ S ++ A+ L+G++ D + V A ++ +
Sbjct: 241 KFGTITSA-VVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSE 299
Query: 192 R 192
R
Sbjct: 300 R 300
>Os04g0620700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 707
Score = 76.6 bits (187), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNR-ETGQSRGFGFVTMSTIEEADKAIEM 76
++VGNLPY+V+ E + Q F++AG EV ++ ++ E G RGFG V +T E A KA+E+
Sbjct: 451 LFVGNLPYNVEQEQVKQFFQEAG--EVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFA----PAFRA----YVGNLPWQVDDSRLLQ 128
+D+ GR + ++ A RG+ R + PA + ++ +D ++
Sbjct: 509 AG-HDLMGRPVRLDLARERGAYTPGSGRDNSSFKKPAQSSGNTIFIKGFDTSLDIHQIRN 567
Query: 129 LFSEH----GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVN 184
EH GE+ S+ D E+G S+G ++ A L A L+G +L G L V+
Sbjct: 568 SLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYE-LNGSDLGGYSLYVD 626
Query: 185 VAAERP 190
A RP
Sbjct: 627 EARPRP 632
>AK110071
Length = 420
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 4/179 (2%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+Y+GNL ++V + L F + G V + V+ + + G S+GFG+V ++AD A E L
Sbjct: 216 LYIGNLFFEVTAPQLEAEFAKFGEVTNSRVVTD-DRGLSKGFGYVEFINQQQADAAREAL 274
Query: 78 NRYDINGRLLNV--NRAAPRGSRVERPPRQFA-PAFRAYVGNLPWQVDDSRLLQLFSEHG 134
++ GR ++V +R + +R R A P+ ++GN+ +Q+ D L LF
Sbjct: 275 DQKVFQGRRISVQYHRRREANNNTKRNQRSTAEPSKTLFIGNMSYQMSDRDLNDLFRSIK 334
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
V++ V DR SG+ RGF E A AL+ + + GR LRV+ + + + G
Sbjct: 335 NVLDVRVAIDRRSGQPRGFAHADFTDVESAVTAKKALEQKSVYGRQLRVDYSGQAKEDG 393
>Os05g0223300 Similar to RNA-binding protein
Length = 102
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
+R YVGNLP+ VD+ L+ F+++G ++A + +D E GR RGFGFV+ E ++ AI
Sbjct: 18 YRVYVGNLPYSVDEQTLMDYFADYG-AISAEIAWDSEMGRPRGFGFVNFEDNESVNAAIH 76
Query: 170 ALDGQELDGRPLRVNVAAERPQR 192
++GQ++ GR + V A RP+R
Sbjct: 77 GMNGQDIGGRKVTVARAQMRPRR 99
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
+VYVGNLPY VD + L F G + AE+ ++ E G+ RGFGFV E + AI
Sbjct: 19 RVYVGNLPYSVDEQTLMDYFADYGAIS-AEIAWDSEMGRPRGFGFVNFEDNESVNAAIHG 77
Query: 77 LNRYDINGRLLNVNRAAPRGSR 98
+N DI GR + V RA R R
Sbjct: 78 MNGQDIGGRKVTVARAQMRPRR 99
>Os10g0321700 Similar to Ribonucleoprotein like protein
Length = 317
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 89 VNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESG 148
V ++A GS + + R + + + ++G + + DD L + F+ +GEV+ A V+ DR +G
Sbjct: 11 VRQSAGSGSPLFQAVRCMSSS-KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTG 69
Query: 149 RSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAE 188
RSRGFGFV+ S +E AI+ +DG++L GR +RV+ A +
Sbjct: 70 RSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 48 IYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQFA 107
+ ++ T RGFGFVT S DK ++ + + I+GR + V R PR E +
Sbjct: 1 MKDKHTKMPRGFGFVTFSDPSVIDKVLQ--DEHTIDGRTVEVKRTVPR----EEMSSKDG 54
Query: 108 PAFRA-YVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDD 166
P R +VG +P + + +L + FS +G+VV ++ D +GRSRGFGFV+ +++ ++
Sbjct: 55 PKTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVER 114
Query: 167 AISALDGQELDGRPLRVNVA 186
+S +L G+ + + A
Sbjct: 115 VMSEGRMHDLAGKQVEIKKA 134
>Os03g0123200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 252
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 10/178 (5%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
KV LPY + +LFE+ G + ++ ++G RG FV+ + E K++E
Sbjct: 73 GKVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFESNEVVMKSLE 132
Query: 76 MLNRYDINGRLLNVNRA-APRGSRVERP------PRQFAPAFRAYVGNLPWQVDDSRLLQ 128
L+ + I R + V R GS+ +R P++ AYVGNL W V ++ L
Sbjct: 133 -LDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKADGCLSAYVGNLKWDVTETDLRD 191
Query: 129 LFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
F ++ + ++ +G SRGF V E L+ A+ ++ EL GRP++++ A
Sbjct: 192 FFKSL-KISSIRFAINKRTGDSRGFCHVDFEDDESLEKAV-GMNQSELRGRPIKISYA 247
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
+YVG+L V L +F Q G V V + T S G+ +V S+ +A +A+EML
Sbjct: 41 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEML 100
Query: 78 NRYDING---RLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
N ING R++ NR P + + A ++ NL +D+ L FS G
Sbjct: 101 NFTPINGKPIRIMYSNR---------DPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG 151
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
+++ V + SG S+G+GFV +E +AIS L+G L+ + + V
Sbjct: 152 NILSCKVATEM-SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYV 199
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRE-TGQSRGFGFVTMSTIEEADKAIEM 76
VYV NL + L ++F + G + V+ RE G+SR FGFV ++A +A+E
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFG--PITSVVVMREGDGKSRCFGFVNFENPDDAARAVED 277
Query: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRA----------YVGNLPWQVDDS-R 125
LN + + V RA + R +F + Y+ NL +DD +
Sbjct: 278 LNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEK 337
Query: 126 LLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNV 185
L ++F++ G + + V+ D +G S+G GFV+ S E+ A+ A++G+ + +PL V +
Sbjct: 338 LKEIFADFGTITSCKVMRDL-NGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVAL 396
Query: 186 AAERPQR 192
A + +R
Sbjct: 397 AQRKEER 403
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+ +++G+L +D + F G V+ ++I ++++GQ +G+GFV ++ AD+ +
Sbjct: 89 VKTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRIL 148
Query: 75 EMLNRYDINGRLL-NVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEH 133
+ N G+++ NV R P + +VG+L V D L + F H
Sbjct: 149 QTYN-----GQMMPNVEMVFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVH 203
Query: 134 -GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
V A VV D+ + RS+G+GFV E A++ ++G RP+R+ AA +
Sbjct: 204 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTT 263
Query: 193 G 193
G
Sbjct: 264 G 264
>Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 460
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
K++VG +P + L +F++ +V+ VI ++ T SRG F+ + EEADKA+
Sbjct: 41 KLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNA 100
Query: 77 L-NRYDING--RLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEH 133
N++ + G L V A R+E + ++G LP V D+ L LFS++
Sbjct: 101 YHNKHTLPGASSPLQVKYADGELERLEH---------KLFIGMLPKNVTDTELTDLFSKY 151
Query: 134 GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQ-ELDGR--PLRVNVAAERP 190
G + + ++ + G F+ +KE+ AI AL+G+ +++G PL V A
Sbjct: 152 GNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEK 211
Query: 191 QR 192
+R
Sbjct: 212 ER 213
>Os06g0589700 Similar to Poly(A)-binding protein (Fragment)
Length = 399
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 53 TGQSRGFGFVTMSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAP---- 108
G SR FGFV E A A++ LN I +L V RA + R +F
Sbjct: 5 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQ 64
Query: 109 ------AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 162
Y+ NL ++D L +LF GEV + V+ D GRS+G GFVS A+ E
Sbjct: 65 KFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVE 123
Query: 163 ELDDAISALDGQELDGRPLRVNVAAERPQR 192
+ ++AI ++G+ + +PL V VA + +R
Sbjct: 124 DANNAILKMNGKMVGKKPLYVAVAQRKEER 153
>Os09g0123200 Paraneoplastic encephalomyelitis antigen family protein
Length = 637
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 8/159 (5%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAG-VVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
K+++G++P + + LFE+ G VVEVA +I +R+TG+ +G FV +T EEA++AI
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVA-LIKDRKTGEQQGCCFVKYATSEEAERAIR 80
Query: 76 ML-NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
L N+Y + G + + G R R A + +V +L Q + ++F+ +G
Sbjct: 81 ALHNQYTLPGAMGPIQVRYADGERE----RHGAIEHKLFVASLNKQATAKEIEEIFAPYG 136
Query: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 173
V + ++ D +SRG GFV +S+E A+SAL G
Sbjct: 137 HVEDVYIMKDGMR-QSRGCGFVKFSSREPALAAMSALSG 174
>Os07g0187300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 308
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
R +VG L W + L + FSE+G+V+ VV +R++GRSRGFGFV+ + +D AI
Sbjct: 8 RIFVGGLSWDTTERTLERAFSEYGKVIETQVVLERDTGRSRGFGFVTFSEPRAVDAAIRG 67
Query: 171 LDGQELDGRPLRVNVAAER 189
+ ELDGR + VN A R
Sbjct: 68 MHNGELDGRTISVNKAQPR 86
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+ +++VG L +D L + F + G V +V+ R+TG+SRGFGFVT S D AI
Sbjct: 6 VGRIFVGGLSWDTTERTLERAFSEYGKVIETQVVLERDTGRSRGFGFVTFSEPRAVDAAI 65
Query: 75 EMLNRYDINGRLLNVNRAAPR 95
++ +++GR ++VN+A PR
Sbjct: 66 RGMHNGELDGRTISVNKAQPR 86
>Os05g0114500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 548
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
KVYVG +PY + + FE G + + + E+G+ RG +T T A +A+
Sbjct: 175 KVYVGGIPYYSSEDDIRSFFEACGSITSVDCMTFPESGKFRGIAILTFKTDAAAQRAL-A 233
Query: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAF-----RAYVGNLPWQVDDSRLLQLFS 131
L+ D+ G L + P S E+ FAP R YVGNL W + + L + FS
Sbjct: 234 LDGADMGGFFLKIQ---PYKSVREK--EDFAPKMIEGYNRVYVGNLAWDITEDDLKKFFS 288
Query: 132 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER 189
+ ++ + D+E+G +G+ V + + A+ LD + + GRP+R+ A +
Sbjct: 289 D-CKISSIRFGTDKETGDFKGYVHVDFSEGTSVAVAMK-LDQKVIKGRPVRIRCAVPK 344
>AK063637
Length = 122
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 168
+R +VG L W DD L FS +GE++++ ++ DRE+GRSRGFGFV+ +S++ + DAI
Sbjct: 8 YRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAI 66
>Os05g0223500
Length = 102
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 110 FRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
+R YVGNLP+ +D L F+ +G ++A + +D GRSRGFGFV+ E ++ AI
Sbjct: 18 YRVYVGNLPFSANDRSLKDSFANYG-AISAEIAWDSVMGRSRGFGFVNFEDSESVNAAIQ 76
Query: 170 ALDGQELDGRPLRVNVAAERPQR 192
++GQ++ GR + V A RP+R
Sbjct: 77 GMNGQDIGGRNVTVAQANTRPRR 99
>Os08g0192900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 572
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 31/191 (16%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
A +++GNL ++++ + + + F++ G V ++ + E G SRGFG V ++ EEA KA+E
Sbjct: 311 ATLFMGNLSFNLNQDQVKEFFQEVGEV-ISVRLATHEDGSSRGFGHVQFASSEEAKKALE 369
Query: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQ--------------- 120
L+ D++GR + ++ A RG+ + P R G+ Q
Sbjct: 370 -LHGCDLDGRPVRLDLAHERGA--------YTPHSRNDTGSFQKQNRGSSQSIFVKGFDS 420
Query: 121 -VDDSRLLQ----LFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQE 175
+++S++ + F++ GE+ SV DRE+G S+G ++ + A+ L G +
Sbjct: 421 SLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALE-LSGSD 479
Query: 176 LDGRPLRVNVA 186
L G L V+ A
Sbjct: 480 LGGYNLYVDEA 490
>Os01g0614500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 447
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
L K++V L ++ +S+ L +F G +E A VI ++ TG+S+G+GFVT + A A+
Sbjct: 75 LRKLFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLAL 134
Query: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAF--------RAYVGNLPWQVDDSRL 126
+ ++ I+GR+ AA + A + +VGN+P + RL
Sbjct: 135 KEPSK-KIDGRMTVTQLAAAGAAGGASGGAAGAGGAPAADVSLRKIFVGNVPADMPSERL 193
Query: 127 LQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE----ELDDAISALDGQEL 176
L F+ +GE+ + +D+++G+ RGF + E L D++ +DG +L
Sbjct: 194 LAHFAAYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQL 247
>Os03g0681900 Similar to RGP-3 (Fragment)
Length = 308
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
R +VG L + D+ +L F G+VV+A ++ +R + R RGFGFV+ + E +D AI
Sbjct: 8 RIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKE 67
Query: 171 LDGQELDGRPLRVNVA 186
+ QELDGR + VN A
Sbjct: 68 MHCQELDGRTISVNKA 83
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
+++VG L + D LA F + G V A+++ R T + RGFGFVT S E D AI+
Sbjct: 7 GRIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIK 66
Query: 76 MLNRYDINGRLLNVNRAAPR 95
++ +++GR ++VN+A P+
Sbjct: 67 EMHCQELDGRTISVNKAEPK 86
>Os01g0766700
Length = 345
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
KV+VG +P L F + G V N++TG +RGF FV ++A AI
Sbjct: 30 KVFVGGVPLGTSESELRAHFSRFGTVAFVGAPKNKQTGAARGFAFVQFVNPDDAAAAIAA 89
Query: 77 -LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPA---FRAYVGNLPWQVDDSRLLQLFSE 132
+R I G +++ A + S P Q +P + +VG LP + +L + F++
Sbjct: 90 GPDRNVIRGTTMDIKLAQLKPS-AGGP--QLSPGDQKRKIFVGGLPVSATEKKLKEYFNK 146
Query: 133 HGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQ 191
GEV A VV D + RGFGF+ AS+E A+ D L G+ + V++A + Q
Sbjct: 147 FGEVNRAIVVIDLNTKMPRGFGFIQFASEESTARALKK-DKHFLCGQWVEVSLAMPKQQ 204
>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 17 KVYVGNLPYDVDSEGLAQLFEQAG--VVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
+++VGN+P + + L + + G VV + + ++RGF FV AD A
Sbjct: 190 RLFVGNVPKGLSEDELRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAK 249
Query: 75 EMLN--RYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSE 132
+ L+ + ++G L V+ A P+GS A YV NLP ++ ++F
Sbjct: 250 QKLSAPNFKVDGSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEI 309
Query: 133 HGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
HGEV V+ ++G R FGFV A + A+ + E+DG+ L V++A
Sbjct: 310 HGEVTKV-VLPPAKAGNKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA 362
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,004,251
Number of extensions: 245465
Number of successful extensions: 1239
Number of sequences better than 1.0e-10: 62
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 90
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)