Os03g0123200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os03g0123200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.95 | 0.47 | 9.86 | -0.429 | 0.999 | -1.21 | 0.675 | 1.27 | -0.401 | 16.7 | 30.08 | 114 | -- | -- |
| 101.5 | 0.469 | 9.83 | -0.222 | 0.985 | -1.23 | 0.302 | -- | -0.351 | 16.7 | 29.77 | 113 | -- | -- |
| 101.01 | 0.468 | 9.85 | -0.414 | 1.01 | -1.25 | -- | 1.05 | -0.409 | 16.7 | 30.2 | 112 | -- | -- |
| 101.73 | 0.47 | 9.83 | -0.218 | 0.985 | -1.23 | -- | -- | -0.349 | 16.7 | 29.8 | 113 | -- | -- |
| 138.42 | 0.548 | 9.88 | -0.594 | -- | -2.2 | -- | 1.07 | -0.55 | -- | 31.51 | 138 | -- | -- |
| 121.34 | 0.516 | 9.78 | 0.0818 | 1.36 | -- | 0.394 | -- | -0.11 | 16.3 | -- | -- | -- | -- |
| 121.77 | 0.517 | 9.78 | 0.0857 | 1.36 | -- | -- | -- | -0.108 | 16.2 | -- | -- | -- | -- |
| 138.47 | 0.548 | 9.85 | -0.454 | -- | -2.14 | -- | -- | -0.511 | -- | 30.8 | 150 | -- | -- |
| 102.85 | 0.472 | 9.82 | -- | 1.02 | -1.14 | -- | -- | -0.307 | 16.6 | 29.86 | 113 | -- | -- |
| 222.09 | 0.696 | 9.77 | 0.0312 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 121.96 | 0.517 | 9.78 | -- | 1.36 | -- | -- | -- | -0.117 | 16.2 | -- | -- | -- | -- |
| 143.54 | 0.558 | 9.84 | -- | -- | -2.01 | -- | -- | -0.439 | -- | 30.91 | 148 | -- | -- |
| 222.12 | 0.696 | 9.77 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.13 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 93.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 93.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 4 | 93.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 14 | 94.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 16 | 94.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 31 | 95.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 37 | 95.76 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 67 | 96.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 107 | 97.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 113 | 97.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 116 | 97.32 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 141 | 97.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 177 | 98.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 190 | 98.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 200 | 98.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 202 | 98.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 211 | 98.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 246 | 98.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 248 | 98.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 265 | 98.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 271 | 98.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 341 | 98.94 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 346 | 98.96 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 366 | 99.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 412 | 99.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 434 | 99.24 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 436 | 99.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 439 | 99.27 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 446 | 99.28 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 485 | 99.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 517 | 99.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 617 | 99.79 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 623 | 99.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 729 | 100.07 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 782 | 100.19 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 783 | 100.19 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 21 |
| 833 | 100.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 871 | 100.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 927 | 100.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 961 | 100.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 983 | 100.60 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |