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Os07g0631900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0319) R2 : 0.889
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.53 (0.0861) R2dC : 0.787 R2C : 0.292
β3 : -3.14 (0.0705) R2dE : 0.559 R2E : 0.0601
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.631 (0.0671) R2dN8 : 0.0276 R2N8 : 0.0302
σ : 0.598
deviance : 164.71
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_____
C
peak time of C : 20.7
E
wheather : radiation
threshold : 46.1
memory length : 243
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.2
open length of G : 15.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.14 0.581 13.8 0.538 4.52 -3.18 -1.18 0.856 -0.565 20.7 43.16 249 15 16
156.22 0.582 13.8 0.517 4.54 -3.23 -0.88 -- -0.562 20.7 46.27 247 15 16
156.73 0.583 13.8 0.566 4.56 -3.09 -- 0.643 -0.572 20.6 47.43 244 15.1 16
156.85 0.583 13.8 0.552 4.53 -3.14 -- -- -0.567 20.7 47.2 245 15.2 15.9
220.43 0.691 13.7 0.658 -- -5.06 -- 2.73 -0.657 -- 64.76 768 15.7 15.8
228.55 0.709 13.8 0.519 4.8 -- -1.24 -- -0.669 17.7 -- -- -- --
232.3 0.714 13.8 0.526 4.8 -- -- -- -0.674 17.7 -- -- -- --
197.97 0.655 13.7 0.616 -- -4.87 -- -- -0.655 -- 157.9 827 14.9 16.2
164.71 0.598 13.8 -- 4.53 -3.14 -- -- -0.631 20.7 46.1 243 15.2 15.8
1425.48 1.76 13.8 0.375 -- -- -- -- -0.788 -- -- -- -- --
239.58 0.724 13.8 -- 4.79 -- -- -- -0.733 17.7 -- -- -- --
205.74 0.668 13.7 -- -- -4.89 -- -- -0.725 -- 144.6 834 14.7 16.3
1429.19 1.76 13.8 -- -- -- -- -- -0.829 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.35 radiation 40.0 270 < th dose dependent rect. 15 16
2 158.61 temperature 15.0 270 > th dose independent rect. 16 15
3 158.63 temperature 10.0 270 > th dose dependent rect. 3 4
8 159.76 radiation 20.0 270 < th dose independent rect. 15 16
10 159.93 precipitation 0.1 270 < th dose independent rect. 7 20
11 159.93 precipitation 0.1 270 < th dose dependent rect. 7 20
14 160.58 temperature 15.0 270 > th dose independent rect. 2 19
18 161.31 wind 9.0 270 < th dose independent rect. 7 20
20 161.48 radiation 30.0 270 < th dose dependent rect. 3 4
22 161.58 radiation 10.0 270 < th dose independent rect. 3 4
24 161.73 wind 5.0 270 < th dose independent rect. 3 4
29 162.28 atmosphere 1010.0 270 < th dose independent rect. 3 4
33 162.38 temperature 15.0 270 > th dose independent rect. 3 17
35 162.40 temperature 10.0 270 > th dose independent rect. 3 4
37 162.40 temperature 30.0 270 < th dose independent rect. 3 4
38 162.40 humidity 50.0 270 > th dose independent rect. 3 4
40 162.40 atmosphere 995.0 270 > th dose independent rect. 3 4
42 162.40 radiation 40.0 270 < th dose independent rect. 3 4
43 162.40 temperature 10.0 270 > th dose independent rect. 7 20
47 162.51 wind 9.0 270 < th dose independent rect. 7 9
48 162.51 precipitation 0.1 270 < th dose independent rect. 7 9
49 162.51 precipitation 0.1 270 < th dose dependent rect. 7 9
57 163.04 temperature 10.0 270 > th dose independent rect. 7 9
58 163.04 atmosphere 1015.0 270 < th dose independent rect. 7 9
61 163.07 temperature 20.0 90 > th dose independent rect. 5 2
62 163.24 precipitation 0.1 270 < th dose independent rect. 3 4
63 163.24 precipitation 0.1 270 < th dose dependent rect. 3 4
64 163.37 wind 7.0 270 < th dose independent rect. 20 7
65 163.48 wind 1.0 270 > th dose independent rect. 7 9
67 163.54 wind 9.0 270 < th dose dependent rect. 3 4
69 163.65 temperature 10.0 270 > th dose independent rect. 20 7
70 163.65 temperature 30.0 270 < th dose independent rect. 20 7
71 163.65 humidity 50.0 270 > th dose independent rect. 20 7
74 163.65 atmosphere 995.0 270 > th dose independent rect. 20 7
75 163.65 radiation 1.0 270 < th dose independent rect. 20 7
81 163.65 atmosphere 1015.0 270 < th dose independent rect. 3 17
82 163.65 radiation 1.0 270 < th dose dependent rect. 20 7
87 163.79 precipitation 0.1 270 < th dose independent rect. 20 7
88 163.79 precipitation 0.1 270 < th dose dependent rect. 20 7
93 164.15 temperature 15.0 90 > th dose dependent rect. 5 2
99 164.42 wind 1.0 270 > th dose independent rect. 7 20
113 164.55 wind 7.0 270 < th dose independent rect. 21 5
115 164.56 radiation 30.0 270 < th dose dependent rect. 2 7
116 164.58 wind 9.0 270 < th dose independent rect. 16 15
117 164.59 atmosphere 995.0 270 > th dose independent rect. 16 15
133 165.01 atmosphere 1015.0 270 < th dose independent rect. 2 19
137 165.15 precipitation 0.1 270 < th dose independent rect. 21 5
138 165.15 precipitation 0.1 270 < th dose dependent rect. 21 5
139 165.16 atmosphere 995.0 270 > th dose independent rect. 7 9
155 165.19 temperature 10.0 270 > th dose independent rect. 21 5
156 165.19 temperature 30.0 270 < th dose independent rect. 21 5
157 165.19 humidity 50.0 270 > th dose independent rect. 21 5
160 165.19 atmosphere 995.0 270 > th dose independent rect. 21 5
161 165.19 radiation 1.0 270 < th dose independent rect. 21 5
168 165.19 radiation 1.0 270 < th dose dependent rect. 21 5
185 165.44 atmosphere 995.0 270 > th dose dependent rect. 3 3
202 165.86 radiation 1.0 90 > th dose independent rect. 5 2
214 165.93 humidity 50.0 270 > th dose independent rect. 15 16
221 166.10 humidity 50.0 90 > th dose independent rect. 17 15
225 166.17 wind 9.0 270 < th dose independent rect. 3 17
227 166.22 humidity 50.0 270 > th dose dependent rect. 21 5
233 166.46 temperature 15.0 10 > th dose dependent rect. 5 3
257 166.73 humidity 50.0 270 > th dose dependent rect. 3 4
274 166.91 radiation 1.0 270 < th dose independent rect. 3 16
323 167.41 wind 1.0 270 > th dose independent rect. 3 4
324 167.42 wind 5.0 90 < th dose independent rect. 5 2
330 167.64 atmosphere 995.0 270 > th dose independent rect. 3 17
334 167.71 wind 9.0 270 < th dose independent rect. 2 19
336 167.75 wind 9.0 270 < th dose dependent rect. 20 6
337 167.82 precipitation 0.1 90 < th dose independent rect. 5 2
338 167.82 precipitation 0.1 90 < th dose dependent rect. 5 2
341 167.83 temperature 10.0 90 > th dose independent rect. 5 2
343 167.83 temperature 30.0 90 < th dose independent rect. 5 2
344 167.83 humidity 50.0 90 > th dose independent rect. 5 2
346 167.83 atmosphere 995.0 90 > th dose independent rect. 5 2
347 167.83 atmosphere 1015.0 90 < th dose independent rect. 5 2
348 167.83 radiation 40.0 90 < th dose independent rect. 5 2
357 167.97 radiation 40.0 270 < th dose independent rect. 12 9
361 168.10 wind 9.0 90 < th dose dependent rect. 5 2
388 168.48 radiation 10.0 270 < th dose dependent rect. 3 16
391 168.56 precipitation 0.1 270 < th dose independent rect. 3 17
393 168.56 precipitation 0.1 270 < th dose dependent rect. 3 17
394 168.59 radiation 1.0 270 > th dose independent rect. 7 8
396 168.60 radiation 40.0 270 < th dose dependent rect. 2 18
397 168.62 wind 1.0 270 > th dose independent rect. 20 7
406 168.89 wind 1.0 270 > th dose independent rect. 21 5
414 169.13 atmosphere 995.0 270 > th dose independent rect. 7 20
415 169.15 humidity 50.0 270 > th dose independent rect. 7 8
417 169.17 atmosphere 995.0 270 > th dose independent rect. 2 19
440 169.55 atmosphere 1005.0 270 > th dose independent rect. 3 4
462 169.61 radiation 20.0 270 < th dose dependent rect. 2 18
481 169.81 precipitation 0.1 270 < th dose independent rect. 16 15
482 169.81 precipitation 0.1 270 < th dose dependent rect. 16 15
507 169.99 precipitation 0.1 270 < th dose independent rect. 2 19
508 169.99 precipitation 0.1 270 < th dose dependent rect. 2 19
599 171.24 atmosphere 1005.0 90 > th dose independent rect. 5 3
658 171.68 radiation 40.0 90 < th dose dependent rect. 5 17
672 171.81 radiation 1.0 90 < th dose dependent rect. 21 10
684 171.99 atmosphere 995.0 10 > th dose dependent rect. 5 3
705 172.30 radiation 1.0 90 < th dose dependent rect. 21 14
708 172.32 humidity 50.0 270 > th dose independent rect. 2 18
725 172.42 humidity 50.0 90 > th dose dependent rect. 5 2
743 172.64 wind 1.0 90 > th dose independent rect. 5 2
763 172.83 radiation 1.0 10 > th dose independent rect. 5 3
774 172.83 humidity 50.0 270 > th dose independent rect. 3 16
804 172.93 precipitation 0.1 10 < th dose independent rect. 5 3
805 172.93 precipitation 0.1 10 < th dose dependent rect. 5 3
815 172.97 temperature 10.0 10 > th dose independent rect. 5 3
817 172.97 temperature 30.0 10 < th dose independent rect. 5 3
818 172.97 humidity 50.0 10 > th dose independent rect. 5 3
820 172.97 atmosphere 995.0 10 > th dose independent rect. 5 3
821 172.97 atmosphere 1015.0 10 < th dose independent rect. 5 3
822 172.97 temperature 10.0 10 > th dose independent rect. 8 21
866 173.10 radiation 40.0 270 < th dose independent rect. 2 19
875 173.20 temperature 10.0 270 > th dose dependent rect. 7 8
882 173.28 radiation 20.0 90 < th dose independent rect. 4 18
885 173.29 temperature 15.0 270 > th dose independent rect. 13 9
909 173.59 radiation 1.0 90 > th dose dependent rect. 18 13
919 173.65 radiation 1.0 90 > th dose dependent rect. 5 2
930 173.71 temperature 30.0 90 < th dose independent rect. 17 15