Os08g0314800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Poly(A)-binding protein.
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Os08g0314800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Poly(A)-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.07 | 0.149 | 13.6 | -0.0952 | 0.146 | 0.496 | 0.13 | 0.494 | -0.0143 | 19.1 | 19.8 | 1312 | -- | -- |
| 10.27 | 0.149 | 13.6 | -0.229 | 0.113 | 0.524 | 0.125 | -- | -0.0366 | 18.3 | 20.49 | 1130 | -- | -- |
| 10.11 | 0.148 | 13.6 | -0.1 | 0.142 | 0.504 | -- | 0.491 | -0.0156 | 19 | 19.68 | 1259 | -- | -- |
| 10.29 | 0.149 | 13.6 | -0.232 | 0.117 | 0.542 | -- | -- | -0.0514 | 18 | 20.3 | 1126 | -- | -- |
| 10.37 | 0.15 | 13.6 | -0.12 | -- | 0.566 | -- | 0.466 | -0.0152 | -- | 19.71 | 880 | -- | -- |
| 18.24 | 0.2 | 13.6 | -0.0503 | 0.147 | -- | 0.0974 | -- | 0.0653 | 20.8 | -- | -- | -- | -- |
| 18.27 | 0.2 | 13.6 | -0.0536 | 0.147 | -- | -- | -- | 0.0652 | 20.9 | -- | -- | -- | -- |
| 10.55 | 0.151 | 13.6 | -0.226 | -- | 0.58 | -- | -- | -0.0471 | -- | 20.3 | 888 | -- | -- |
| 11.61 | 0.159 | 13.6 | -- | 0.126 | 0.487 | -- | -- | -0.0327 | 18.3 | 20.21 | 1131 | -- | -- |
| 19.49 | 0.206 | 13.6 | -0.0536 | -- | -- | -- | -- | 0.0642 | -- | -- | -- | -- | -- |
| 18.34 | 0.2 | 13.6 | -- | 0.147 | -- | -- | -- | 0.0712 | 20.9 | -- | -- | -- | -- |
| 11.72 | 0.159 | 13.6 | -- | -- | 0.508 | -- | -- | -0.00674 | -- | 21.62 | 877 | -- | -- |
| 19.57 | 0.206 | 13.6 | -- | -- | -- | -- | -- | 0.0701 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 2 | 9.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 5 | 9.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 6 | 9.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 13 | 9.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 36 | 10.00 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 78 | 10.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 94 | 10.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 98 | 10.10 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 108 | 10.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 109 | 10.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 112 | 10.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 186 | 10.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 234 | 10.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 262 | 10.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 291 | 10.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 307 | 10.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 330 | 10.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 352 | 10.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 367 | 10.28 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 408 | 10.29 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 456 | 10.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 458 | 10.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 482 | 10.31 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 532 | 10.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 625 | 10.34 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 894 | 10.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |