Os03g0278500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polyadenylate binding protein, human types 1, 2, 3, 4 family protein.
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Os03g0278500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polyadenylate binding protein, human types 1, 2, 3, 4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.01 | 0.611 | 2.81 | -0.397 | 0.18 | -1.03 | -0.619 | 2.75 | -0.0608 | 4.97 | 30.2 | 197 | -- | -- |
| 169.31 | 0.606 | 2.79 | -0.18 | 0.203 | -0.719 | -0.534 | -- | -0.0709 | 5.05 | 29.86 | 204 | -- | -- |
| 169.87 | 0.607 | 2.81 | -0.392 | 0.205 | -1.07 | -- | 2.65 | -0.0509 | 5.6 | 30.17 | 202 | -- | -- |
| 169.96 | 0.607 | 2.79 | -0.185 | 0.214 | -0.753 | -- | -- | -0.0682 | 5.48 | 29.9 | 204 | -- | -- |
| 171.42 | 0.61 | 2.81 | -0.346 | -- | -0.971 | -- | 2.62 | -0.0389 | -- | 30.5 | 198 | -- | -- |
| 181.48 | 0.632 | 2.8 | -0.0774 | 0.0548 | -- | 0.963 | -- | -0.101 | 16.5 | -- | -- | -- | -- |
| 183.93 | 0.635 | 2.8 | -0.0703 | 0.0645 | -- | -- | -- | -0.0957 | 15 | -- | -- | -- | -- |
| 171.62 | 0.61 | 2.79 | -0.156 | -- | -0.66 | -- | -- | -0.0483 | -- | 30.2 | 192 | -- | -- |
| 170.89 | 0.609 | 2.79 | -- | 0.207 | -0.756 | -- | -- | -0.0645 | 5.46 | 29.9 | 204 | -- | -- |
| 184.17 | 0.634 | 2.8 | -0.0731 | -- | -- | -- | -- | -0.0974 | -- | -- | -- | -- | -- |
| 184.06 | 0.635 | 2.79 | -- | 0.0658 | -- | -- | -- | -0.0879 | 15 | -- | -- | -- | -- |
| 172.25 | 0.611 | 2.78 | -- | -- | -0.663 | -- | -- | -0.0225 | -- | 30.4 | 205 | -- | -- |
| 184.31 | 0.634 | 2.79 | -- | -- | -- | -- | -- | -0.0893 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.52 | temperature | 30.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 3 | 165.57 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 6 | 166.11 | temperature | 30.0 | 270 | < th | dose independent | sin | 10 | NA |
| 10 | 166.43 | temperature | 30.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 12 | 166.46 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 1 |
| 13 | 166.46 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 14 | 166.52 | temperature | 30.0 | 270 | > th | dose independent | sin | 10 | NA |
| 48 | 166.98 | temperature | 30.0 | 720 | < th | dose independent | sin | 8 | NA |
| 49 | 166.98 | temperature | 30.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 50 | 167.04 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 80 | 167.16 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 16 |
| 82 | 167.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 8 |
| 101 | 167.57 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 114 | 167.70 | temperature | 30.0 | 720 | > th | dose independent | sin | 8 | NA |
| 127 | 168.01 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 138 | 168.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 23 |
| 171 | 168.39 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 183 | 168.67 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 6 |
| 194 | 169.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 12 |
| 195 | 169.09 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 223 | 169.43 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 231 | 169.51 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 250 | 169.65 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 251 | 169.67 | temperature | 30.0 | 270 | > th | dose independent | rect. | 9 | 10 |
| 267 | 169.75 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 374 | 169.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 378 | 169.86 | temperature | 30.0 | 270 | < th | dose independent | sin | 0 | NA |
| 387 | 169.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 390 | 169.93 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 20 |
| 391 | 169.97 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 398 | 170.05 | temperature | 30.0 | 270 | > th | dose independent | sin | 1 | NA |
| 403 | 170.07 | temperature | 30.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 413 | 170.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 433 | 170.30 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 11 | 10 |
| 441 | 170.34 | radiation | 1.0 | 10 | < th | dose independent | rect. | 4 | 3 |
| 458 | 170.45 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 490 | 170.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 12 |
| 504 | 170.63 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 547 | 170.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 556 | 170.78 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 578 | 170.87 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 630 | 171.01 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 11 | 21 |
| 681 | 171.14 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 753 | 171.32 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 786 | 171.38 | temperature | 30.0 | 720 | < th | dose independent | rect. | 2 | 15 |
| 879 | 171.62 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 904 | 171.66 | humidity | 90.0 | 720 | > th | dose independent | rect. | 18 | 2 |
| 922 | 171.71 | temperature | 25.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 953 | 171.82 | temperature | 25.0 | 270 | > th | dose dependent | sin | 22 | NA |
| 983 | 171.92 | radiation | 40.0 | 720 | > th | dose independent | rect. | 8 | 2 |