BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0278500 Os03g0278500|AK070850
(647 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0278500 Polyadenylate binding protein, human types 1, ... 1264 0.0
Os08g0314800 Similar to Poly(A)-binding protein 421 e-117
Os09g0115400 Similar to Poly(A)-binding protein 410 e-114
Os04g0504800 Similar to Poly(A)-binding protein 402 e-112
AK108879 365 e-101
AK119744 333 2e-91
Os06g0589700 Similar to Poly(A)-binding protein (Fragment) 192 7e-49
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 124 3e-28
Os09g0462700 Similar to RNA Binding Protein 47 117 2e-26
Os07g0615400 Similar to Oligouridylate binding protein 107 3e-23
Os04g0449900 Similar to RNA Binding Protein 47 106 5e-23
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 106 7e-23
Os03g0569900 Similar to RNA Binding Protein 45 102 1e-21
Os08g0520300 Similar to Oligouridylate binding protein 102 1e-21
Os03g0174100 Similar to RNA Binding Protein 45 100 5e-21
Os04g0625800 Similar to RNA Binding Protein 45 97 4e-20
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 87 4e-17
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 86 7e-17
Os08g0557100 Similar to Nucleic acid-binding protein precursor 85 2e-16
Os09g0565200 Similar to Nucleic acid-binding protein precursor 84 4e-16
Os09g0279500 Similar to Plastid-specific 30S ribosomal prot... 77 4e-14
Os07g0158300 Similar to RNA binding protein 74 2e-13
Os01g0945800 RNA-binding region RNP-1 (RNA recognition moti... 74 3e-13
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 74 4e-13
Os08g0192900 RNA-binding region RNP-1 (RNA recognition moti... 70 4e-12
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 70 6e-12
Os12g0136200 WD40-like domain containing protein 69 1e-11
AK110071 68 2e-11
Os02g0567900 Similar to RNA Binding Protein 47 68 2e-11
AK120313 68 2e-11
Os08g0117100 RNA-binding region RNP-1 (RNA recognition moti... 67 4e-11
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 1264 bits (3272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/617 (98%), Positives = 605/617 (98%)
Query: 31 GGLNATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQA 90
GGLNATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQA
Sbjct: 31 GGLNATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQA 90
Query: 91 DAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFG 150
DAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFG
Sbjct: 91 DAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFG 150
Query: 151 DILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTN 210
DILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTN
Sbjct: 151 DILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTN 210
Query: 211 NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAK 270
NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAK
Sbjct: 211 NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAK 270
Query: 271 RAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEV 330
RAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEV
Sbjct: 271 RAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEV 330
Query: 331 GDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLY 390
GDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLY
Sbjct: 331 GDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLY 390
Query: 391 VAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYP 450
VAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYP
Sbjct: 391 VAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYP 450
Query: 451 PIGISQEWRHNMFPSSHNIQQIHSPIMRNTPRQYXXXXXXXXXXXXHFHHTVNYVPHAQP 510
PIGISQEWRHNMFPSSHNIQQIHSPIMRNTPRQY HFHHTVNYVPHAQP
Sbjct: 451 PIGISQEWRHNMFPSSHNIQQIHSPIMRNTPRQYRNNRGRMNGNMMHFHHTVNYVPHAQP 510
Query: 511 AKEFMSMSRQRFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNLLATAPPEEQKNMLGN 570
AKEFMSMSRQRFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNLLATAPPEEQKNMLGN
Sbjct: 511 AKEFMSMSRQRFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNLLATAPPEEQKNMLGN 570
Query: 571 RLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVKPKPEDQ 630
RLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVKPKPEDQ
Sbjct: 571 RLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVKPKPEDQ 630
Query: 631 EALHPGFLLDSAGVNAN 647
EALHPGFLLDSAGVNAN
Sbjct: 631 EALHPGFLLDSAGVNAN 647
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/634 (39%), Positives = 358/634 (56%), Gaps = 63/634 (9%)
Query: 39 ALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEK 98
+LYVGDL SV++ L +VF ++G++ SVRVCRD T SL Y YVN+ S ADAA ALE
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 99 LNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
LN + I KPIR+M+SNRDP +R+SG N+F+KNL+ +DN +L + F FG+ILSCKVA
Sbjct: 100 LNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVA 159
Query: 159 KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSER-STNNDDKYTN 217
G S+GYGFVQF L+E+A +I LN ++++V F++K ER + + + K+ N
Sbjct: 160 TEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNN 219
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMN 277
+Y+KNL + TE+ +K F ++G + SV +M+ DG S+ FGFV+F+NP+ A RA E +N
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 278 GMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDD-ALR 336
G K YV RAQKK+ER+ L+ E+ E K+ G+N+Y+KN++D + DD L+
Sbjct: 280 GKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLK 339
Query: 337 ERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQR 396
E F +FG ITS K+MRD G+SKG GFV + + E+A A+ M G M KPLYVA+AQR
Sbjct: 340 EIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQR 399
Query: 397 KEERRAKLEQRFAELATMVGATS-----PVIPTGYPQ-----FYFAHPSTHLPQSPGRQG 446
KEERRA+L+ +F+++ MV S P+ P G P FY P + PG G
Sbjct: 400 KEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQPGF-G 458
Query: 447 F-------MYPPIG--------ISQEWRHNMFPS-----SHNIQQI----HSPIMRNTPR 482
F M P +G + Q+ + P+ + IQQ H ++ R
Sbjct: 459 FQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQPMPMGHQQMLPRGSR 518
Query: 483 QYXXXXXXXXXXXXHFHHTVNYVPHAQPAKEFMSMSRQRFSHAKYIPNDIMANGLAIHHG 542
F VP M R S A P +
Sbjct: 519 GGYRYASGRGMPDNAFRGVGGLVPSP------YEMGRMPLSDAGAPPQVPIG-------- 564
Query: 543 DSISSMNDAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVML 602
A + LA +PP++Q+ MLG LYPLV++ D A+K+TGMLLE+ +EV+ L
Sbjct: 565 --------ALASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHL 616
Query: 603 LYSSNMLSAKIEECVKLLQEVKPK----PEDQEA 632
+ S + L AK+ E +++L+ + + P DQ A
Sbjct: 617 IESPDALKAKVAEAMEVLRNAQQQQANTPTDQLA 650
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%)
Query: 216 TNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGT--SKGFGFVSFQNPESAKRAK 273
T+LY+ +LD + + + FSQ G V+SV++ RD T S G+ +V+F +P A RA
Sbjct: 39 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVC-RDVNTRLSLGYAYVNFSSPADAARAL 97
Query: 274 ESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDD 333
E +N + K + R+ R+ KS +N++IKN++ + +
Sbjct: 98 EMLNFTPINGKPI----------------RIMYSNRDPSSRKSGAANIFIKNLDKSIDNK 141
Query: 334 ALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAI 393
AL + F+ FGNI S K+ + G SKG+GFV + E A+ A+S + G++ K +YV
Sbjct: 142 ALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGP 201
Query: 394 AQRKEER 400
RK+ER
Sbjct: 202 FVRKQER 208
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/614 (37%), Positives = 343/614 (55%), Gaps = 44/614 (7%)
Query: 39 ALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEK 98
+LYVGDL SV++ L +VF ++G + SVRVCRD T SL Y YVNY S ADAA ALE
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEM 100
Query: 99 LNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
LN + I KPIR+M+SNRDP R+SG N+F+KNL+ +DN +L + FC FG+ILSCKVA
Sbjct: 101 LNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVA 160
Query: 159 KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDD-KYTN 217
+ G S+GYGFVQ+ E+A A+I LN ++++V FI+K ER + K+ N
Sbjct: 161 TDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNN 220
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMN 277
+Y+KNL ++ TE+ +K F ++G + S +M+ DG SK FGFV+F++P+ A +A + +N
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELN 280
Query: 278 GMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRE 337
G K YV RAQKK+ER+ L+ E+ E K +N+Y+KN++D V DD LRE
Sbjct: 281 GKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRE 340
Query: 338 RFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRK 397
F E+G ITS K+MRD G+S+G GFV + + E+A A++ M M KPLYVA+AQRK
Sbjct: 341 LFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRK 400
Query: 398 EERRAKLEQRFAE-----LATMVGATSPVIPTGYPQ-----FYFAHPSTHLPQSPGRQGF 447
E+R+A+L+ +F++ LA VG P+ P G P FY P + PG
Sbjct: 401 EDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINTQPG---- 456
Query: 448 MYPPIGISQEWRHNMFPSSHNIQQIHSPIMRNTPR-QYXXXXXXXXXXXXHFHHTVNYVP 506
G Q M P + + P+++ + Q
Sbjct: 457 ----FGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQRPAGRRAGAGGMQQPMPMGQQQM 512
Query: 507 HAQPAKEFMSMSRQRFSHAKYIPNDIM--ANGLAIHHGDSISSMNDAFNNLLATAP---- 560
A+ + + R+ + +P+ M G + + M + A+ P
Sbjct: 513 MARGGRGY------RYPTGRGMPDPAMHGVGGGVMPSPYEMGGM--PMRDAAASQPVPIG 564
Query: 561 ----------PEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLS 610
P++Q+ MLG LYPLV++ + A+K+TGMLLE+ +EV+ LL S L
Sbjct: 565 ALATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALK 624
Query: 611 AKIEECVKLLQEVK 624
AK+ E +++L+ +
Sbjct: 625 AKVAEAMEVLRTAQ 638
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/606 (38%), Positives = 340/606 (56%), Gaps = 31/606 (5%)
Query: 39 ALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEK 98
+LYVGDL SV + L E+F + G + SVRVCRD ++ SL Y YVN+ + DAA ALE
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 99 LNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVA 158
LN + + KPIRVM+SNRDP +RRSG N+F+KNL+ +D+ +L + F FG+ILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 159 KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDD-KYTN 217
+E G S+G+GFVQ+ E+A ++I++LN + ++V F++K ER + D K+ N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 218 LYMKNLDDDIT-EELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESM 276
+++KNL + T E+L+K+ F YG + S IM DG S+ FGF++F++P+ A RA E +
Sbjct: 220 VFVKNLSESTTKEDLVKI-FGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
NG + K YV RAQKK+ER+ L+R E+ + K G N+Y+KN++D +GDD L
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 337 ERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQR 396
E F+ +G ITS KIMRD G+SKG GFV ++T EEA A++ M G M GKPLYVA AQR
Sbjct: 339 ELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQR 398
Query: 397 KEERRAKLEQRFAE---------LATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGF 447
KE+R+A L+ +F++ +A + P+ P G FY P +P PG
Sbjct: 399 KEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIMPPQPG---- 454
Query: 448 MYPPIGISQEWRHNMFPSSHNIQQIHSPIMRNT-----PRQYXXXXXXXXXXXXHFHHTV 502
G Q+ M P ++ P+++ P
Sbjct: 455 ----FGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQ 510
Query: 503 NYVPHAQ-----PAKEFMSMSRQRFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNLLA 557
+P + PA + I + M G + + + LA
Sbjct: 511 QMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG-GFPVRDAGLSPAPIGTLTSALA 569
Query: 558 TAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECV 617
A PE+Q+ +LG LYPLVE + A+K+TGMLLE+ +EV+ LL S L +K+ E +
Sbjct: 570 NANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAM 629
Query: 618 KLLQEV 623
+L+ V
Sbjct: 630 DVLRNV 635
>AK108879
Length = 670
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/374 (46%), Positives = 261/374 (69%), Gaps = 3/374 (0%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
LYVG+LH V E L E+F +IG ++S+RVCRD T SL Y YVN+ S AD A+E L
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 100 NHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAK 159
N++LI +P R+MWS RDP RRSGVGN+F+KNL+ +DN +L + F FG+ILSCKV
Sbjct: 106 NYALIKGQPCRLMWSQRDPALRRSGVGNIFIKNLDKTIDNKALHDTFSAFGNILSCKVVT 165
Query: 160 NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDD---KYT 216
++ G SRG+GFV + +E+AD +I +N G ++ V I + ER ++ ++ ++T
Sbjct: 166 DDQGASRGFGFVHYETREAADLAIDKVNGMLLNGIKVFVGHHISRKERISHLEELKAQFT 225
Query: 217 NLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESM 276
N+++KNLD+ +T+E ++ F +G + S + + + G S+GFGF++F E A++A E++
Sbjct: 226 NVFIKNLDEAVTDEELQALFEPFGEIQSAILQRDESGKSRGFGFINFVEHEDAQKAVEAL 285
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
N + + K ++V RAQKK+ER + L+R E + E ++K +G N+Y+KN+++ V +D LR
Sbjct: 286 NDVEVNGKRIFVGRAQKKSERTEELRRQFEALKLERMSKFHGVNLYVKNLDEMVTEDQLR 345
Query: 337 ERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQR 396
F FG+I+S ++M DEKG+S+GFGFVC++ PEEA A+S M G M GKPLYVA+AQR
Sbjct: 346 MEFTPFGSISSLRVMVDEKGVSRGFGFVCFSAPEEAARAISEMNGRMVNGKPLYVALAQR 405
Query: 397 KEERRAKLEQRFAE 410
++ERRA+LE +FA+
Sbjct: 406 RDERRAQLEAQFAQ 419
>AK119744
Length = 746
Score = 333 bits (855), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/480 (39%), Positives = 268/480 (55%), Gaps = 66/480 (13%)
Query: 34 NATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAA 93
N +LYVG+L SV E L E+F IG + S+RVCRD T SL Y YVNY S D
Sbjct: 44 NQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGE 103
Query: 94 IALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDIL 153
ALE+LN+++I KP R+MWS RDP R++G GNVF+KNL+ +DN +L + F FG+IL
Sbjct: 104 KALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL 163
Query: 154 SCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDD 213
SCKVA++E G S+GYGFV + E+A+ +I+++N +++ V I K ER + ++
Sbjct: 164 SCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEE 223
Query: 214 ---KYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAK 270
+TN+Y+KN+D D+T++ + F ++G + S I + + G S+GFGFV++ E+A
Sbjct: 224 VKANFTNIYVKNIDLDVTDDEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAAS 283
Query: 271 RAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEV 330
A E++N + LYV RAQKK ER++ L++ +E R E +K G N+YIKN+ND+V
Sbjct: 284 AAVEALNDTEFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDV 343
Query: 331 GDDALRERFNEFGNITSAKIMRD------------------------------------- 353
D+ LR+ F FG ITSAK+MRD
Sbjct: 344 DDEKLRDMFTPFGTITSAKVMRDAMPAERSETPADEKKEESKEESKEESEKTEEGAEEKK 403
Query: 354 -------------EKGI---SKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRK 397
EK I SKGFGFVC++ P+EA AV+ M M GKPLYVA+AQRK
Sbjct: 404 DENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
Query: 398 EERRAKLEQRF-AELATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYPPIGISQ 456
+ R+ +LE A + G PQ + A PG+Q M+P G Q
Sbjct: 464 DVRKNQLEATIQARNQLRMQQQQQQQFGGIPQMFIA---------PGQQPMMFPAGGRGQ 514
>Os06g0589700 Similar to Poly(A)-binding protein (Fragment)
Length = 399
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 201/408 (49%), Gaps = 73/408 (17%)
Query: 248 MKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEE 307
M+ +G S+ FGFV+F+ E A+ A +++NG +G LYVARAQKK+ER+ L+ E
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 308 KRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYN 367
+N+ K N+Y+KN++D++ D+ LR+ F FG + S K+M D G SKG GFV +
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 368 TPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAE---LATMVGATSPVIPT 424
T E+A A+ M G M KPLYVA+AQRKEER+A L FA LATM P I
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAP 180
Query: 425 GYPQFYFAH---------------------PSTHLP----QSPGRQGFMYPPIGISQEWR 459
QF F H P+ +P + PG++ PP G
Sbjct: 181 H--QFNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQPGQRS--GPPHGGMPRHL 236
Query: 460 HN---MFPSSHNIQQIHSPIMRNTPRQYXXXXXXXXXXXXHFHHTVNYVPHAQPAKEFMS 516
HN MF + N H P RN H HH
Sbjct: 237 HNPHQMFHQNANQGFRHMPNRRNG---------VANPAMLHQHH---------------- 271
Query: 517 MSRQRFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNL---LATAPPEEQKNMLGNRLY 573
RFS P M A+ H + + NNL LA+A PE+Q+ +LG+ L+
Sbjct: 272 ----RFSS----PMQPMQQ--AVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLF 321
Query: 574 PLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQ 621
PLVE+ + A K+TGMLLEL +EV+ L+ S + L K+ E +K+L+
Sbjct: 322 PLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVLE 369
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 13/156 (8%)
Query: 159 KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKY--- 215
++ +G SR +GFV F E A +++NLN L+VA KKSER K+
Sbjct: 2 RDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHD 61
Query: 216 ----------TNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQN 265
NLY+KNLDDDI +E ++ F +G V S K+M G SKG GFVSF
Sbjct: 62 KNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFAT 121
Query: 266 PESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYL 301
E A A MNG ++G K LYVA AQ+K ERK +L
Sbjct: 122 VEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFL 157
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 176/384 (45%), Gaps = 48/384 (12%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
LYVG+L SV L+E+F G + RV D T S YG+V Y A+ A++++
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 100 NHSLILDKPIRVMWS-------NRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDI 152
N L+ ++V + N ++ + + ++V NL+ ++ L LF FG++
Sbjct: 355 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEV 414
Query: 153 LSCKVAKNE-DGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV------------- 198
+ KVAK+ G S+GYGFVQ++ A ++ +LN GR++ V
Sbjct: 415 TNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSA 474
Query: 199 ---------ATFIKKSERSTNNDDKYTNLYMKNLDDDI-TEELIKLKFSQYGLVISVKIM 248
+ S T + +NLY+ N+ I T++L++L F +G + +++
Sbjct: 475 VESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVEL-FLPFGKITHARVV 533
Query: 249 KRDDG-TSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEE 307
D ++KG+GF+ F + ESA +A +MNG L+G + + V R L
Sbjct: 534 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASI 585
Query: 308 KRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYN 367
+ N S +YI N+ + D + F FG IT K++ + + + V Y
Sbjct: 586 SAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVLMNLE-----YSLVWYA 638
Query: 368 TPEEAKCAVSNMRGVMFYGKPLYV 391
A AV +M G M GK L V
Sbjct: 639 DAPSATKAVQHMDGYMVEGKRLVV 662
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 180/413 (43%), Gaps = 38/413 (9%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
LYV ++ S+ + L+E+F G +T RV D T ++ YG++ + A A+ +
Sbjct: 503 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 562
Query: 100 NHSLILDKPIRVMWSNRDPDARRSGV--------GNVFVKNLNDLVDNVSLQELFCKFGD 151
N +L+ + I V + P A S V +++ NL + + LF FG
Sbjct: 563 NGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQ 622
Query: 152 ILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNN 211
I KV N + Y V +A SA ++Q+++ G++L +K+SE T N
Sbjct: 623 IT--KVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRL----VVKRSELCTTN 671
Query: 212 DDK----------YTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFV 261
+ NLY+ + +TE+ F +G V+ ++ + + +G V
Sbjct: 672 ASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRF-----QRYGMV 726
Query: 262 SFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNV 321
F NP A A + ++G +G L V A AE L + + + + +N+
Sbjct: 727 RFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNL 786
Query: 322 YIKNINDEVGDDALRERFNEFGNITSAKIMRDE-KGISKGFGFVCYNTPEEAKCAVSNMR 380
Y+ ++ V ++ L + F G IT AK++ + G+SKGFGFV + A A+++M
Sbjct: 787 YVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMN 846
Query: 381 GVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSPV--IPTGY-PQFY 430
G G L V IA + + F TM IPT Y P +Y
Sbjct: 847 GYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDPAKAAVGIPTSYWPHYY 899
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 172/394 (43%), Gaps = 50/394 (12%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
LYV +L S+ + L+ +F G +T+ +V +D+ T S YG+V Y S AA A+ L
Sbjct: 390 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 449
Query: 100 NHSLILDKPIRVMWSN---------------------RDPDARRS----GVGNVFVKNLN 134
N L+ + I V S P R+ + N++V N+
Sbjct: 450 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 509
Query: 135 DLVDNVSLQELFCKFGDILSCKVAKNEDG-TSRGYGFVQFALQESADASIQNLNNSHFCG 193
+D L ELF FG I +V + D +++GYGF++F ESA +I +N + G
Sbjct: 510 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 569
Query: 194 RQLHV-----ATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIM 248
+ V + S T D + LY+ NL +T + + F+ +G + V +M
Sbjct: 570 EMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKV-LM 628
Query: 249 KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEK 308
+ + V + + SA +A + M+G ++ K L V +R + +
Sbjct: 629 NLE------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-------KRSELCTTNASQA 675
Query: 309 RNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNT 368
+ I + + +N+Y+ + + +D + F FG + A++ R ++ +G V ++
Sbjct: 676 GGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YGMVRFDN 730
Query: 369 PEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRA 402
P A A+ ++ G G L V +A E A
Sbjct: 731 PSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNA 764
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 135/285 (47%), Gaps = 18/285 (6%)
Query: 127 NVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASIQN 185
N++V NL V + L ELF FG I+ +V + G S+GYGFV+++ A +I+
Sbjct: 294 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 353
Query: 186 LNNSHFCGRQLHV-ATFIKKSERSTNNDDKYTN---LYMKNLDDDI-TEELIKLKFSQYG 240
+N G L V T SE ++ K T+ LY+ NL + T+ LI L F +G
Sbjct: 354 MNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHL-FLPFG 412
Query: 241 LVISVKIMK-RDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQ 299
V + K+ K G SKG+GFV + +P A A +NG L+ + + V + +
Sbjct: 413 EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPN 472
Query: 300 YLQRLHEEKRNEIITKSNG---------SNVYIKNINDEVGDDALRERFNEFGNITSAKI 350
RN + + SN+Y+ N+ + L E F FG IT A++
Sbjct: 473 SAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV 532
Query: 351 MRDEKGIS-KGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIA 394
+ D S KG+GF+ + E A A++ M G + G+ + V +A
Sbjct: 533 VADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 577
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 17/184 (9%)
Query: 216 TNLYMKNLDDDI-TEELIKLKFSQYGLVISVKIMKRDD---GTSKGFGFVSFQNPESAKR 271
TNLY+ NL + + +LI+L F +G ++ +++ DD G S+G+GFV + +P A
Sbjct: 293 TNLYVGNLPASVGSHKLIEL-FLPFGQIVRSRVV--DDCFTGLSQGYGFVKYSDPRCASE 349
Query: 272 AKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVG 331
A + MNG L+ L V + E+ + +++ + +Y+ N++ +
Sbjct: 350 AIKRMNGRLVEGTALKVRVTGFPSS---------EDNSQQPSKETDMAKLYVCNLSLSMN 400
Query: 332 DDALRERFNEFGNITSAKIMRDEK-GISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLY 390
D L F FG +T+AK+ +D G+SKG+GFV Y++P A AV ++ G + G+ +
Sbjct: 401 TDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIE 460
Query: 391 VAIA 394
V ++
Sbjct: 461 VRVS 464
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 22/285 (7%)
Query: 31 GGLNATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQA 90
GG ++VGDLH + E +L FG G + +++V R+ T S YG+V + S A
Sbjct: 108 GGGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHA 167
Query: 91 DAAIALEKLNHSLI--LDKPIRVMWSNRDPDARRSGVG---NVFVKNLNDLVDNVSLQEL 145
A LE ++ D+P R+ W++ RRS + ++FV +L V++ +L E
Sbjct: 168 AAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLET 227
Query: 146 FCK-FGDILSCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV--ATF 201
F K + + KV + + G S+GYGFV+F ++ +N + R + + AT
Sbjct: 228 FSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATP 287
Query: 202 IKKSERS--------TNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDG 253
K S S ++ D T +++ LD +++E+ ++ FSQYG + SVKI
Sbjct: 288 RKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIP----- 342
Query: 254 TSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERK 298
K GFV F ++A+ A + +NG +G +T+ ++ + A ++
Sbjct: 343 VGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQ 387
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 144/323 (44%), Gaps = 28/323 (8%)
Query: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
++V +L+ +D L F G++++ KV +N + G S GYGFV+F +A+ ++
Sbjct: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEG- 175
Query: 187 NNSHFCGR---------QLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFS 237
F G +++ A+F RS D ++++ +L D+ + + FS
Sbjct: 176 ----FAGHIMPNTDQPFRINWASFSMGDRRSDIASDH--SIFVGDLASDVNDTTLLETFS 229
Query: 238 Q-YGLVISVKI-MKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKA 295
+ Y V K+ + + G SKG+GFV F + A MNG+ ++ + + A +
Sbjct: 230 KRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRK 289
Query: 296 ERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEK 355
+ + +T + V++ ++ V +D LR+ F+++G I+S KI
Sbjct: 290 TSGTSGPTGSAARSDGDLTNTT---VFVGGLDPNVSEDDLRQTFSQYGEISSVKIP---- 342
Query: 356 GISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMV 415
+ K GFV + + A+ A+ + G + + ++ + ++ + + M
Sbjct: 343 -VGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQLRSDNGSQWNNGMY 401
Query: 416 GATSPVIPT-GYPQFYFAHPSTH 437
A SP GYP + A P +
Sbjct: 402 YAASPFYSGYGYPAPFPADPGMY 424
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 25/296 (8%)
Query: 111 VMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGF 170
++ N P S +V+V N++ V L+E+F G + CK+ + E + YGF
Sbjct: 50 ILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS---YGF 106
Query: 171 VQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEE 230
V + + SA SI LN G+ + V +R D + N+++ +L ++T+
Sbjct: 107 VDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTD--HFNIFVGDLSPEVTDS 164
Query: 231 LIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVA 289
+ FS Y ++M + G S+G+GFVSF+N + A+ A +NG LGS+ +
Sbjct: 165 ALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCN 224
Query: 290 RAQKKAERKQY--------------LQRLHEEKRNEIITKSNGS--NVYIKNINDEVGDD 333
A K A + L +EK NE ++N VY+ N+ EV D
Sbjct: 225 WATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQD 284
Query: 334 ALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPL 389
L F+ G + I + KGFGFV Y+ EA A+ G + GKP+
Sbjct: 285 VLHRLFHALG---AGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPI 337
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 131/294 (44%), Gaps = 46/294 (15%)
Query: 35 ATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAI 94
+T ++YVG++H V E L EVF G + ++ R +S YG+V+Y + AA+
Sbjct: 62 STCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAAL 117
Query: 95 ALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILS 154
++ LN I + IRV W+ +R + F + DL V+ LF F S
Sbjct: 118 SILTLNGKQIFGQLIRVNWAY--ASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSS 175
Query: 155 CKVAK----NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQL-------------- 196
C A+ + G SRGYGFV F Q+ A ++I +LN RQ+
Sbjct: 176 CSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQ 235
Query: 197 ------HVATFI---------KKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQY-- 239
+VA K +E + N+ +Y +Y+ NL ++T++++ F
Sbjct: 236 QTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGA 295
Query: 240 GLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQK 293
G + V+I KGFGFV + N A A + NG +LG K + + K
Sbjct: 296 GAIEEVRIQ-----LGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGNK 344
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 21/275 (7%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
++VGDL + E +L FG G + +++V R+ T S YG+V + S A AL+
Sbjct: 67 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNF 126
Query: 100 NHSLI--LDKPIRVMWSNRDPDARRSGVG---NVFVKNLNDLVDNVSLQELFC-KFGDIL 153
++ D+P ++ W++ +RS V ++FV +L V + L ELF K+ +
Sbjct: 127 TGHVMPNTDRPFKLNWASYSMGEKRSEVASDYSIFVGDLAADVTDEMLMELFANKYRSVK 186
Query: 154 SCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVA---------TFIK 203
KV + + G SRGYGFV+F ++ +N ++ R + +
Sbjct: 187 GAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGS 246
Query: 204 KSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSF 263
+ ++ D +Y+ LD +++E+ ++ F++YG V SVKI K GFV F
Sbjct: 247 STPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIP-----LGKQCGFVQF 301
Query: 264 QNPESAKRAKESMNGMLLGSKTLYVARAQKKAERK 298
+ A+ A + +NG ++G + + ++ + + ++
Sbjct: 302 VSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQ 336
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 41 YVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLN 100
YVG+L V EE L E+F + G + +V V +D T+ YG+V + S+ DA A++ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILN 87
Query: 101 HSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILS-CKVAK 159
+ KPIRV +++D + G N+F+ NL+ VD L + F FG I++ K+ +
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
Query: 160 N-EDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSER 207
+ E G SRG+GFV + ES+D +I+ +NN H C R + V+ KK +
Sbjct: 147 DPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYAYKKDTK 195
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 100/178 (56%), Gaps = 7/178 (3%)
Query: 120 ARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQES 178
A R+ +V NL+ V L ELF + G +++ V K+ +GYGFV+F +E
Sbjct: 19 AERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 179 ADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQ 238
AD +I+ LN G+ + V K+ + + D NL++ NLD D+ E+L+ FS
Sbjct: 79 ADYAIKILNMIKLYGKPIRV----NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
Query: 239 YGLVISVKIMKRDD--GTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKK 294
+G++++ + RD G S+GFGFVS+ + ES+ +A E+MN L ++ + V+ A KK
Sbjct: 135 FGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYAYKK 192
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 211 NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMK-RDDGTSKGFGFVSFQNPESA 269
N D T Y+ NLD ++EEL+ F Q G V++V + K R +G+GFV F++ E A
Sbjct: 22 NQDATT--YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
Query: 270 KRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDE 329
A + +N + L K + R K ++ K+ L G+N++I N++ +
Sbjct: 80 DYAIKILNMIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLDPD 122
Query: 330 VGDDALRERFNEFGNI-TSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGK 387
V + L + F+ FG I T+ KIMRD E G S+GFGFV Y++ E + A+ M +
Sbjct: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNR 182
Query: 388 PLYVAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYPQFYFA 432
P+ V+ A +K+ K E+ ++ A +P P FA
Sbjct: 183 PITVSYAYKKD---TKGERHGTPAERLLAANNPGSQKNRPHTMFA 224
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 133/286 (46%), Gaps = 30/286 (10%)
Query: 37 VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIAL 96
V L++GDL + E +L F + G L S ++ R+ T YG++ + S A A L
Sbjct: 66 VRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVL 125
Query: 97 EKLNHSLIL--DKPIRVMWSNRDPDARRSGVGN---VFVKNLNDLVDNVSLQELF-CKFG 150
+ N ++ ++ ++ W+ +R G+ +FV +L V ++ LQ+ F +
Sbjct: 126 QGYNGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQ 185
Query: 151 DILSCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFC----------------- 192
+ KV + G S+GYGFV+F + ++ + N +C
Sbjct: 186 SVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEM-NGQYCSSRPMRIGPASNKKNIG 244
Query: 193 GRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDD 252
G+Q AT+ +++D T +++ LD +T+E++K FS YG ++ VKI
Sbjct: 245 GQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQAFSPYGELVYVKIP---- 300
Query: 253 GTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERK 298
K GFV + N SA+ A +NG LG +++ ++ + ++
Sbjct: 301 -VGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQ 345
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 138/292 (47%), Gaps = 17/292 (5%)
Query: 125 VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASI 183
V +++ +L ++ L F + G+++S K+ +N + G GYGF++F A+ +
Sbjct: 66 VRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVL 125
Query: 184 QNLNNSHFC-GRQ---LHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKF-SQ 238
Q N G Q L+ AT +R + D YT +++ +L D+T+ +++ F +
Sbjct: 126 QGYNGQMMPNGNQVFKLNWATSGAGEKRGDDGSD-YT-IFVGDLASDVTDLILQDTFKAH 183
Query: 239 YGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKK--- 294
Y V K++ R G SKG+GFV F + + RA MNG S+ + + A K
Sbjct: 184 YQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNI 243
Query: 295 AERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDE 354
++Q + + + N + V++ ++ V D+ L++ F+ +G + KI
Sbjct: 244 GGQQQPSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQAFSPYGELVYVKIP--- 300
Query: 355 KGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQ 406
+ K GFV Y+ A+ A+ + G G+ + ++ + ++ + +Q
Sbjct: 301 --VGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPGNKQPQQDQ 350
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 49/309 (15%)
Query: 117 DPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQ 176
DP RS V+V N++ V L E+F G + CK+ + E + +GFV + +
Sbjct: 68 DPSTCRS----VYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKSS---FGFVDYYDR 120
Query: 177 ESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKF 236
SA +I L+ H CG+ + V ++R + + ++++ +L ++ + + F
Sbjct: 121 RSAALAIMTLHGRHICGQAIKVNWAYASTQRE--DTSGHFHIFVGDLSSEVNDATLYACF 178
Query: 237 SQYGLVISVKIMKRDD-GTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQK-K 294
S Y ++M + G S+G+GFVSF+N + A+ A M G LGS+ + A K
Sbjct: 179 SAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNN 238
Query: 295 AERKQYLQRLHEEKRNEIITKSNGSN-------------------------VYIKNINDE 329
AE KQ E + + +NGS+ VY+ N+ E
Sbjct: 239 AEEKQ------ETDNHNAVVLTNGSSSNPGMEASQDTGSKENPENNPDCTTVYVGNLGHE 292
Query: 330 VGDDALRERFNEF--GNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGK 387
V D L F G I ++ +D KGFGFV Y+ EA A+ G++ GK
Sbjct: 293 VNRDELHRHFYNLGVGAIEEVRVQQD-----KGFGFVRYSNHGEAALAIQMANGLVVRGK 347
Query: 388 PLYVAIAQR 396
P+ + +
Sbjct: 348 PIKCSWGNK 356
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 46/296 (15%)
Query: 35 ATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAI 94
+T ++YVG++H +V E L+EVF G + ++ R +S +G+V+Y + AA+
Sbjct: 70 STCRSVYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKSS----FGFVDYYDRRSAAL 125
Query: 95 ALEKLNHSLILDKPIRVMW---SNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGD 151
A+ L+ I + I+V W S + D SG ++FV +L+ V++ +L F +
Sbjct: 126 AIMTLHGRHICGQAIKVNWAYASTQREDT--SGHFHIFVGDLSSEVNDATLYACFSAYPS 183
Query: 152 ILSCKVA-KNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKK------ 204
+V N+ G SRGYGFV F Q+ A+ +I + RQ+ K
Sbjct: 184 CSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNAEEKQ 243
Query: 205 ---------------------------SERSTNNDDKYTNLYMKNLDDDITEELIKLKFS 237
S+ + N+ T +Y+ NL ++ + + F
Sbjct: 244 ETDNHNAVVLTNGSSSNPGMEASQDTGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFY 303
Query: 238 QYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQK 293
G+ ++ + D KGFGFV + N A A + NG+++ K + + K
Sbjct: 304 NLGVGAIEEVRVQQD---KGFGFVRYSNHGEAALAIQMANGLVVRGKPIKCSWGNK 356
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 38/295 (12%)
Query: 37 VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIAL 96
V L++GDL E +L F G L SV++ R+ TS YG++ ++S A L
Sbjct: 15 VRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVL 74
Query: 97 EKLNHSLI--LDKPIRVMWSNRDPDARRSGVG---NVFVKNLNDLVDNVSLQELF-CKFG 150
+ N + + + R+ W++ RR G ++FV +L V + LQE F +
Sbjct: 75 QTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVSYP 134
Query: 151 DILSCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERST 209
+ KV + + G S+GYGFV+FA + + ++ +N + R + ++ I K +
Sbjct: 135 SVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGS 194
Query: 210 --------------------------NNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVI 243
++D T +++ NLD ++TE+ ++ Q+G +I
Sbjct: 195 QLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFGELI 254
Query: 244 SVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERK 298
VKI +K GFV + + SA+ A + ++G +G + + ++ + A ++
Sbjct: 255 YVKI-----PANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSWGRSPASKQ 304
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 27/278 (9%)
Query: 125 VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASI 183
V +++ +L D L F G++ S K+ +N+ GYGF++F E A+ +
Sbjct: 15 VRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVL 74
Query: 184 QNLNNSHFCGRQ----LHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFS-Q 238
Q N + G + L+ A+F R D ++++ +L D+T+ L++ F
Sbjct: 75 QTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPDH--SIFVGDLAPDVTDYLLQETFRVS 132
Query: 239 YGLVISVKIMKR-DDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAER 297
Y V K++ + G SKG+GFV F + RA MNGM ++ + ++ A K
Sbjct: 133 YPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTT 192
Query: 298 KQYLQRLHEE-----------KRNEIITKSNGSN--VYIKNINDEVGDDALRERFNEFGN 344
LQ + + ++ S+ +N ++I N++ V +D LR+ +FG
Sbjct: 193 GSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFGE 252
Query: 345 ITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGV 382
+ KI + K GFV Y + A+ AV + G
Sbjct: 253 LIYVKIPAN-----KACGFVQYASRASAEEAVQRLHGT 285
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 123/266 (46%), Gaps = 21/266 (7%)
Query: 37 VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIAL 96
V L++GDL + E ++ F G + SV++ RD + YG+V + S+A A L
Sbjct: 89 VKTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRIL 148
Query: 97 EKLNHSLI--LDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELF-CKFGDIL 153
+ N ++ ++ R+ W++ + +FV +L V + LQE F + +
Sbjct: 149 QTYNGQMMPNVEMVFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVK 208
Query: 154 SCKVAKNE-DGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKK-----SER 207
KV ++ S+GYGFV+F ++ +N R + + K ER
Sbjct: 209 GAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQER 268
Query: 208 STN-------NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGF 260
N ND T +++ LD ++TE+++K F+ YG V+ VKI K GF
Sbjct: 269 VPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYGEVVHVKIP-----VGKRCGF 323
Query: 261 VSFQNPESAKRAKESMNGMLLGSKTL 286
V + N SA++A + G L+G + +
Sbjct: 324 VQYVNRPSAEQALAVLQGTLIGGQNV 349
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 127/267 (47%), Gaps = 12/267 (4%)
Query: 125 VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASI 183
V +++ +L +D + F G++ S K+ ++ + G +GYGFV+F + +AD +
Sbjct: 89 VKTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRIL 148
Query: 184 QNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFS-QYGLV 242
Q N ++ + ++ YT +++ +L D+T+ L++ F Y V
Sbjct: 149 QTYNGQMMPNVEMVFRLNWASAGEKRDDTPDYT-IFVGDLAADVTDYLLQETFRVHYPSV 207
Query: 243 ISVKIMKRDDGT--SKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
K++ D T SKG+GFV F +P RA MNGML S+ + + A K +
Sbjct: 208 KGAKVVT-DKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANK-KTTGV 265
Query: 301 LQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG 360
+R+ + + N + +++ ++ V +D L++ F +G + KI + K
Sbjct: 266 QERVPNAQGAQSENDPNNTTIFVGGLDPNVTEDVLKQVFAPYGEVVHVKIP-----VGKR 320
Query: 361 FGFVCYNTPEEAKCAVSNMRGVMFYGK 387
GFV Y A+ A++ ++G + G+
Sbjct: 321 CGFVQYVNRPSAEQALAVLQGTLIGGQ 347
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
VFV NL VD+ L LF + G + +V + + G SRG+GFV + E A A+++
Sbjct: 82 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQF 141
Query: 187 NNSHFCGRQLHVAT--------FIKKSERST-NNDDKYTNLYMKNLDDDITEELIKLKFS 237
N F GR L V + F +S R +N D LY+ NL + ++ FS
Sbjct: 142 NGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFS 201
Query: 238 QYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAE 296
+ G V+ K++ R+ G S+GFGFV++ + E A +++G+ L + + V A+ K
Sbjct: 202 EQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPR 261
Query: 297 RK 298
R+
Sbjct: 262 RQ 263
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
++VG+L SV L +F + G++ V V D T S +G+V + +A A+E+
Sbjct: 82 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQF 141
Query: 100 NHSLILDKPIRVMWS---NRD---PDARRSGVGN------VFVKNLNDLVDNVSLQELFC 147
N +P+RV RD P + R G N ++V NL VDN +L+ LF
Sbjct: 142 NGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFS 201
Query: 148 KFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSE 206
+ G +L KV + E G SRG+GFV + E + +I NL+ GRQ+ V K
Sbjct: 202 EQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPR 261
Query: 207 R 207
R
Sbjct: 262 R 262
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 6/186 (3%)
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESM 276
+++ NL + + F Q G V V+++ R G S+GFGFV+ E A A E
Sbjct: 82 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQF 141
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
NG + L V + R + R R + + +Y+ N+ V + L
Sbjct: 142 NGYTFQGRPLRV-NSGPPPPRDDFAPR---SPRGGGSNFDSSNKLYVGNLAWGVDNSTLE 197
Query: 337 ERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
F+E G + AK++ D E G S+GFGFV Y + EE A+SN+ GV G+ + V +A+
Sbjct: 198 NLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAE 257
Query: 396 RKEERR 401
K R+
Sbjct: 258 SKPRRQ 263
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESM 276
+++ NL + + F Q G V V+++ + G S+GFGFV+ + E + A E
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
NG +L ++L V + R+Q QR + N VY+ N++ V + AL
Sbjct: 148 NGYILDGRSLRV-NSGPPPPREQSSQRAPRGEAN---------RVYVGNLSWGVDNAALA 197
Query: 337 ERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
F+ G + AK++ D E G S+GFGFV Y + EE + AVSN+ G G+ + V +A+
Sbjct: 198 NLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAE 257
Query: 396 RKEERR 401
K RR
Sbjct: 258 SKPPRR 263
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 7/175 (4%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
++VG+L SV L +F + G++ V V D T S +G+V S + A+E+
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 100 NHSLILDKPIRVMWSNRDP------DARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDIL 153
N ++ + +RV P A R V+V NL+ VDN +L LF G++L
Sbjct: 148 NGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVL 207
Query: 154 SCKVAKN-EDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSER 207
KV + E G SRG+GFV + E + ++ NL+ + GRQ+ V K R
Sbjct: 208 EAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPR 262
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 9/180 (5%)
Query: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASIQNL 186
VFV NL VD+ L LF + G + +V ++ G SRG+GFV + E +A+++
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 187 NNSHFCGRQLHVATFI-----KKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGL 241
N GR L V + + S+R+ + +Y+ NL + + FS G
Sbjct: 148 NGYILDGRSLRVNSGPPPPREQSSQRAPRGEAN--RVYVGNLSWGVDNAALANLFSGEGE 205
Query: 242 VISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
V+ K++ R+ G S+GFGFV++ + E + A +++G + + + V A+ K R+QY
Sbjct: 206 VLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPRRQY 265
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 12/185 (6%)
Query: 218 LYMKNLDDDITEELIKLKFSQYGLV-ISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESM 276
+Y+ NL D+ E + F Q G+V ++ I R+ G S+GFGFV+ E A +A E +
Sbjct: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
N + + L V RA + R + R + Y+ N+ +V D L
Sbjct: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQF----------APAFRAYVGNLPWQVDDSRLL 127
Query: 337 ERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
+ F+E G + +A ++ D E G S+GFGFV + EE A+S + G G+PL V +A
Sbjct: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 187
Query: 396 RKEER 400
+ +R
Sbjct: 188 ERPQR 192
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 125 VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASI 183
+ V+V NL VD+ L +LF + G + +V N E G SRG+GFV + E AD +I
Sbjct: 15 LAKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAI 74
Query: 184 QNLNNSHFCGRQLHVATFIKKSERSTNNDDKYT---NLYMKNLDDDITEELIKLKFSQYG 240
+ LN GR L+V + R ++ Y+ NL + + + FS++G
Sbjct: 75 EMLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHG 134
Query: 241 LVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAER 297
V++ ++ R+ G S+GFGFVS + E A +++G L + L V A ++ +R
Sbjct: 135 EVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQR 192
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 216 TNLYMKNLDDDITEELIKLKFSQYGLV-ISVKIMKRDDGTSKGFGFVSFQNPESAKRAKE 274
+Y+ NL DI E + F Q G+V +S I R+ S+GFGFV+ E A++A E
Sbjct: 143 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 202
Query: 275 SMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDA 334
+ + + L V +A + R + R +Y+ N+ +V D
Sbjct: 203 MFHRYDVDGRLLTVNKAAPRGARVERPPRQF----------GPSFRIYVGNLPWQVDDSR 252
Query: 335 LRERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAI 393
L + F+E G + A+++ D E G S+GFGFV T EE A++ + G G+ L V +
Sbjct: 253 LVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNV 312
Query: 394 AQRKEERR 401
A+ + RR
Sbjct: 313 AEERPPRR 320
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 5/180 (2%)
Query: 126 GNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQ 184
V+V NL +D+ L +LF + G + +V N E SRG+GFV + E A+ +++
Sbjct: 143 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 202
Query: 185 NLNNSHFCGRQLHV---ATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGL 241
+ GR L V A + ER +Y+ NL + + + FS++G
Sbjct: 203 MFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGK 262
Query: 242 VISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
V+ +++ R+ G S+GFGFV+ E A +++G L + L V A+++ R+ +
Sbjct: 263 VVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEERPPRRGF 322
>Os09g0279500 Similar to Plastid-specific 30S ribosomal protein 2, chloroplast
precursor (PSRP- 2)
Length = 245
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASIQNL 186
++V N+ V N L +F G + +V ++ G SR +GFV + E A+A+I++L
Sbjct: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
Query: 187 NNSHFCGRQLHV---ATFIKKSERSTNN------DDKYTNLYMKNLDDDITEELIKLKFS 237
N + GR++ V +F+ +RS D +Y +Y+ NL +T E++K FS
Sbjct: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQY-KVYVGNLAKSVTTEMLKNFFS 190
Query: 238 QYGLVISVKIMKRDDGT--SKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARA 291
+ G V+S + R GT SKG+GFV+F + E + A + N L + + V +A
Sbjct: 191 EKGEVLSATV-SRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
LYVG++ +V + L +F GT+ V D T S R+G+V + +A A+E L
Sbjct: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
Query: 100 NHSLILDKPIRV-MWSNRDPDARRSGVG----------NVFVKNLNDLVDNVSLQELFCK 148
N + + + I+V + + P+ RS V+V NL V L+ F +
Sbjct: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSE 191
Query: 149 FGDILSCKVAK-NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV 198
G++LS V++ S+GYGFV F+ +E A++ NN+ G+ + V
Sbjct: 192 KGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESM 276
LY+ N+ +T + + F+ +G V ++M + G S+ FGFV+ PE A A ES+
Sbjct: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRL-HEEKRNEIITKSNGSNVYIKNINDEVGDDAL 335
N +G + + V + +L + E + + VY+ N+ V + L
Sbjct: 132 NETEVGGRKIKVNVTE------SFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEML 185
Query: 336 RERFNEFGNITSAKIMR-DEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYV 391
+ F+E G + SA + R SKG+GFV +++ EE + AVS G+P+ V
Sbjct: 186 KNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
>Os07g0158300 Similar to RNA binding protein
Length = 364
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 126 GNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASIQ 184
G +FV NL + + + + F + G + + ++ ++ SRG+ FV A E A +IQ
Sbjct: 134 GRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQ 193
Query: 185 NLNNSHFCGRQLHV-----------ATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIK 233
N + GR V A + R DD +Y NL + + ++
Sbjct: 194 MFNGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALR 253
Query: 234 LKF-SQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQ 292
F Q GL+ + I +RD G S+GFGFVSF+ E A+ A E+++G+ L + L ++ A+
Sbjct: 254 AAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAE 313
Query: 293 K--KAERKQYLQRLHEEKRNE 311
+ A +Q EE +E
Sbjct: 314 QNPTAGSPSTVQSQEEETASE 334
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESM 276
L++ NL +T I FS+ G V +V+I+ + S+GF FV+ E A A +
Sbjct: 136 LFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMF 195
Query: 277 NGMLLGSKTLYV-----ARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVG 331
NG LLG +T V R ++A R E +R++ K +Y N+ V
Sbjct: 196 NGALLGGRTARVNYPEVPRGGERAVGSAAATR--ENRRDDGTFK-----IYAGNLGWGVR 248
Query: 332 DDALRERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLY 390
DALR F + A+++ + + G S+GFGFV + T E+A+ A+ + GV G+PL
Sbjct: 249 ADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLR 308
Query: 391 VAIAQR 396
+++A++
Sbjct: 309 LSMAEQ 314
>Os01g0945800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 363
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 109/271 (40%), Gaps = 47/271 (17%)
Query: 137 VDNVSLQELFCKFGDILSCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFCG-R 194
VD L+E KFG + C V K G SRG+G+V F+ SAD + L H G R
Sbjct: 14 VDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFS---SADDAKNVLECEHVLGNR 70
Query: 195 QLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGT 254
L V K E + K T +++ + + E + + F YG + + M ++ G+
Sbjct: 71 TLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDL-YMPKEHGS 129
Query: 255 S--KGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY------------ 300
+G GF++FQ+ ES + + L T+ V RA K E +Y
Sbjct: 130 KGHRGIGFITFQSAESVDSIMQDSH--ELDGTTVVVDRATPKDEEVRYPPSRGASQGGYG 187
Query: 301 ----------------LQRLHEE-----KRNEIITKSNG---SNVYIKNINDEVGDDALR 336
L++ R S G +++ + E + LR
Sbjct: 188 AYNAYISAATRYAALGAPTLYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQEANTEDLR 247
Query: 337 ERFNEFGNITSAKIMRDEKGIS-KGFGFVCY 366
F +FG I A I +D K +GFGFV +
Sbjct: 248 HYFGKFGRIVDAYIPKDPKRSGHRGFGFVTF 278
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 216 TNLYMKNLDDDITEELIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKE 274
T LY NL + + Y V+++ R G S+GF FV+ E ++ +
Sbjct: 145 TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 204
Query: 275 SMNGMLLGSKTLYVARAQK-KAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDD 333
+++G L +T+ V A K K + Y + H+ +++ N++ V +
Sbjct: 205 NLDGSLYSGRTMRVNFADKPKPKLPLYPETEHK--------------LFVGNLSWTVTSE 250
Query: 334 ALRERFNEFGNITSAKIMRD-EKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVA 392
L E F + GN+ A+++ D E G S+G+GFVCY+T EE A+S++ G G+ + V
Sbjct: 251 MLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVN 310
Query: 393 IAQRKE 398
+A K+
Sbjct: 311 LALGKK 316
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
LY G+L + L + T V V D AT S + +V + D ++ L
Sbjct: 147 LYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKNL 206
Query: 100 NHSLILDKPIRVMWSNRD-------PDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDI 152
+ SL + +RV ++++ P+ +FV NL+ V + L E+F K G++
Sbjct: 207 DGSLYSGRTMRVNFADKPKPKLPLYPETEH----KLFVGNLSWTVTSEMLTEMFQKCGNV 262
Query: 153 LSCKVAKN-EDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV 198
+ +V + E G SRGYGFV ++ +E D ++ +LN + GR++ V
Sbjct: 263 VGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRV 309
>Os08g0192900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 572
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 18/184 (9%)
Query: 127 NVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNL 186
+F+ NL+ ++ ++E F + G+++S ++A +EDG+SRG+G VQFA E A +++ L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALE-L 370
Query: 187 NNSHFCGRQLHV------ATFIKKSERST-----NNDDKYTNLYMKNLDDDITEELIKLK 235
+ GR + + + S T N ++++K D + E I+
Sbjct: 371 HGCDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESKIRES 430
Query: 236 ----FSQYGLVISVKI-MKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVAR 290
F+ G + V + M R+ G SKG ++ F++ S +A E ++G LG LYV
Sbjct: 431 LEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALE-LSGSDLGGYNLYVDE 489
Query: 291 AQKK 294
A+ K
Sbjct: 490 AKPK 493
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 126 GNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASIQ 184
G +FV + S + F K+G I + K++ RG+GFV F+ D S+
Sbjct: 66 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFS-----DPSVI 120
Query: 185 N--LNNSHFC-GRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGL 241
+ L + H GR + V + + E S+ + K +++ L +TE+ ++ FS YG
Sbjct: 121 DKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGK 180
Query: 242 VISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKK 294
++ +IM G S+GFGFV+F++ +S +R LG K + + +A+ K
Sbjct: 181 IVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 234
>Os12g0136200 WD40-like domain containing protein
Length = 515
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
+YVG + V E L + +G + VR+ R +S Y +VN+ ++ A A+++L
Sbjct: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR--GKDDSRGYAFVNFRTKGLALKAVKEL 183
Query: 100 NHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGD-ILSCKVA 158
N++ + K IRV S +F+ N+ + +++ + G +L +
Sbjct: 184 NNAKLKGKRIRVSSSQ--------AKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLM 235
Query: 159 K-NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTN 217
K + +RGYGFV++ A+ + Q +++ F +L NND T+
Sbjct: 236 KVSSANRNRGYGFVEYYNHACAEYARQEMSSPTF---KLDSNAPTVSWADPKNNDSASTS 292
Query: 218 ----LYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRA- 272
+Y+KNL ++T+ +K F +G + V + G +GFV F++ A RA
Sbjct: 293 QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRAL 352
Query: 273 ----KESMNGMLLGSKTLYVARAQKKAER 297
+ ++G +L A KK +R
Sbjct: 353 QNTERYELDGQVLDCSLAKPPAADKKDDR 381
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 30/272 (11%)
Query: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLN 187
V+V ++ V + L+ L G+++ ++ + +D SRGY FV F + A +++ LN
Sbjct: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD-DSRGYAFVNFRTKGLALKAVKELN 184
Query: 188 NSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGL-VISVK 246
N+ G+++ V++ K++ L++ N+ T++ + + G V+
Sbjct: 185 NAKLKGKRIRVSSSQAKNK-----------LFIGNVPHSWTDDDFRKVVEEVGPGVLKAD 233
Query: 247 IMKRDDGT-SKGFGFVSFQNPESAKRAKESMNG--MLLGSKTLYVARAQKKAERKQYLQR 303
+MK ++G+GFV + N A+ A++ M+ L S V+ A
Sbjct: 234 LMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWA------------ 281
Query: 304 LHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGF 363
+ K N+ + S +VY+KN+ V L+ F G I + G +GF
Sbjct: 282 --DPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGF 339
Query: 364 VCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
V + A A+ N G+ L ++A+
Sbjct: 340 VHFKDRSMAMRALQNTERYELDGQVLDCSLAK 371
>AK110071
Length = 420
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 125 VGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQ 184
+GN+F + V L+ F KFG++ + +V ++ G S+G+G+V+F Q+ ADA+ +
Sbjct: 218 IGNLFFE-----VTAPQLEAEFAKFGEVTNSRVVTDDRGLSKGFGYVEFINQQQADAARE 272
Query: 185 NLNNSHFCGRQLHVATF--------IKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKF 236
L+ F GR++ V K+++RST K L++ N+ +++ + F
Sbjct: 273 ALDQKVFQGRRISVQYHRRREANNNTKRNQRSTAEPSK--TLFIGNMSYQMSDRDLNDLF 330
Query: 237 SQYGLVISVKI-MKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYV 288
V+ V++ + R G +GF F + ESA AK+++ + + L V
Sbjct: 331 RSIKNVLDVRVAIDRRSGQPRGFAHADFTDVESAVTAKKALEQKSVYGRQLRV 383
>Os02g0567900 Similar to RNA Binding Protein 47
Length = 257
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 106 DKPIRVMWSNRDPDARRSGVGN---VFVKNLNDLVDNVSLQELFCK-FGDILSCKVAKNE 161
D+ ++ W++ +R+ + + +FV +L V + L +LF K + + KV +
Sbjct: 5 DRAFKLNWASYSMGEKRAELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDA 64
Query: 162 D-GTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVA---------TFIKKSERSTNN 211
+ G SRGYGFV+F ++ +N ++ R + + R +++
Sbjct: 65 NTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDS 124
Query: 212 DDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKR 271
D +Y+ LD + TE+ ++ F++YG + SVKI K GFV F N A+
Sbjct: 125 DSTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKIP-----VGKQCGFVQFVNRPDAEE 179
Query: 272 AKESMNGMLLGSKTLYVARAQKKAERK 298
A + +NG +G + + ++ + A ++
Sbjct: 180 ALQGLNGSTIGKQAVRLSWGRSPASKQ 206
>AK120313
Length = 409
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 126 GNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGT-SRGYGFVQFALQESADASIQ 184
G +FV + S + F K+G I + K++ RG GFV F+ D S+
Sbjct: 78 GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFS-----DPSVI 132
Query: 185 N--LNNSHFC-GRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGL 241
+ L + H GR + V + + E S+ + K +++ L +TE+ ++ FS YG
Sbjct: 133 DKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGK 192
Query: 242 VISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKK 294
++ +IM G S+GFGFV+F++ +S +R LG K + + +A+ K
Sbjct: 193 IVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 246
>Os08g0117100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 319
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 6/187 (3%)
Query: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIMKR-DDGTSKGFGFVSFQNPESAKRAKESM 276
L++ NL + + F YG V+SV+I + + G S+G GFV+ ++ A+ A ++
Sbjct: 136 LFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNAL 195
Query: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALR 336
+G L + + V + +++ + H + I +S +Y+ NI V LR
Sbjct: 196 DGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESP-HKIYVGNIAWSVEPQELR 254
Query: 337 ERFNEFGNITSAKIMRDEK-GISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
E F++ G + S +++ D K G + +GF+ + + EE + A+ + F+G+ + V Q
Sbjct: 255 EYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL-KLDNTHFHGRNILV--RQ 311
Query: 396 RKEERRA 402
EER+A
Sbjct: 312 AHEERQA 318
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,268,790
Number of extensions: 832716
Number of successful extensions: 3226
Number of sequences better than 1.0e-10: 34
Number of HSP's gapped: 3060
Number of HSP's successfully gapped: 65
Length of query: 647
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 540
Effective length of database: 11,448,903
Effective search space: 6182407620
Effective search space used: 6182407620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)