Os07g0615400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oligouridylate binding protein.
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Os07g0615400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oligouridylate binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.5 | 0.452 | 9.78 | 0.0776 | 0.446 | 3.49 | -0.99 | 0.505 | 0.177 | 20.1 | 15.3 | 10 | -- | -- |
| 92.67 | 0.448 | 9.79 | 0.00272 | 0.448 | 3.52 | -1.07 | -- | 0.156 | 20.3 | 15.3 | 9 | -- | -- |
| 95.26 | 0.455 | 9.78 | 0.113 | 0.444 | 3.48 | -- | 0.761 | 0.184 | 19.7 | 15.23 | 9 | -- | -- |
| 95.77 | 0.456 | 9.78 | 0.0489 | 0.458 | 3.41 | -- | -- | 0.168 | 19.6 | 15.3 | 9 | -- | -- |
| 100.34 | 0.467 | 9.77 | 0.0884 | -- | 3.55 | -- | 0.693 | 0.181 | -- | 14.9 | 89 | -- | -- |
| 212.04 | 0.683 | 9.67 | 0.726 | 1.18 | -- | 1.06 | -- | 0.666 | 15.7 | -- | -- | -- | -- |
| 215.24 | 0.687 | 9.67 | 0.742 | 1.19 | -- | -- | -- | 0.672 | 15.8 | -- | -- | -- | -- |
| 100.61 | 0.467 | 9.78 | -0.0113 | -- | 3.54 | -- | -- | 0.151 | -- | 15 | 91 | -- | -- |
| 95.84 | 0.456 | 9.79 | -- | 0.461 | 3.44 | -- | -- | 0.162 | 19.6 | 15.3 | 9 | -- | -- |
| 293.61 | 0.801 | 9.67 | 0.693 | -- | -- | -- | -- | 0.64 | -- | -- | -- | -- | -- |
| 229.75 | 0.709 | 9.69 | -- | 1.18 | -- | -- | -- | 0.589 | 15.8 | -- | -- | -- | -- |
| 100.61 | 0.467 | 9.78 | -- | -- | 3.54 | -- | -- | 0.153 | -- | 15 | 91 | -- | -- |
| 306.27 | 0.817 | 9.68 | -- | -- | -- | -- | -- | 0.563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.93 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 5 | 80.73 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 56 | 89.45 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 57 | 89.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 60 | 90.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 74 | 91.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 78 | 92.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 81 | 92.56 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 84 | 92.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 86 | 92.82 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 91 | 93.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 100 | 93.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 102 | 94.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 130 | 95.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 132 | 95.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 140 | 96.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 142 | 96.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 146 | 96.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 147 | 96.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 159 | 97.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 188 | 99.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 200 | 99.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 201 | 99.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 205 | 100.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 207 | 100.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 215 | 100.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 230 | 101.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 272 | 103.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 273 | 103.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 298 | 103.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 319 | 104.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 324 | 104.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 330 | 104.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 352 | 105.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 358 | 106.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 383 | 106.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 503 | 109.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 553 | 110.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 570 | 110.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 571 | 110.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 614 | 111.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 623 | 111.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |