BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0615400 Os07g0615400|AK119233
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0615400 Similar to Oligouridylate binding protein 709 0.0
Os08g0520300 Similar to Oligouridylate binding protein 460 e-130
Os04g0625800 Similar to RNA Binding Protein 45 152 6e-37
Os03g0174100 Similar to RNA Binding Protein 45 145 4e-35
Os03g0569900 Similar to RNA Binding Protein 45 145 6e-35
Os09g0462700 Similar to RNA Binding Protein 47 137 1e-32
Os04g0449900 Similar to RNA Binding Protein 47 137 1e-32
Os02g0567900 Similar to RNA Binding Protein 47 112 5e-25
AK108879 108 8e-24
Os03g0278500 Polyadenylate binding protein, human types 1, ... 104 1e-22
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 102 4e-22
Os04g0504800 Similar to Poly(A)-binding protein 100 2e-21
Os09g0565200 Similar to Nucleic acid-binding protein precursor 99 6e-21
Os08g0314800 Similar to Poly(A)-binding protein 98 9e-21
Os08g0557100 Similar to Nucleic acid-binding protein precursor 95 9e-20
Os07g0158300 Similar to RNA binding protein 94 1e-19
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 94 1e-19
Os09g0115400 Similar to Poly(A)-binding protein 92 8e-19
AK119744 92 9e-19
Os09g0279500 Similar to Plastid-specific 30S ribosomal prot... 92 1e-18
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 86 7e-17
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 79 6e-15
Os02g0622500 RNA-binding region RNP-1 (RNA recognition moti... 77 2e-14
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 76 5e-14
Os08g0567200 RNA-binding region RNP-1 (RNA recognition moti... 75 1e-13
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 71 2e-12
Os04g0591000 RNA-binding region RNP-1 (RNA recognition moti... 70 3e-12
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 68 1e-11
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/384 (90%), Positives = 346/384 (90%)
Query: 44 QQQIEPILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS 103
QQQIEPILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS
Sbjct: 44 QQQIEPILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS 103
Query: 104 YGFVDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTD 163
YGFVDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTD
Sbjct: 104 YGFVDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTD 163
Query: 164 SALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRC 223
SALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRC
Sbjct: 164 SALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRC 223
Query: 224 NWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQ 283
NWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQ
Sbjct: 224 NWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQ 283
Query: 284 DVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGN 343
DVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGN
Sbjct: 284 DVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGN 343
Query: 344 KXXXXXXXXXXXXXXXXXXXXXXDLLEYQRSLALSKMVSSXXXXXXXXXXXXXXXXGMGA 403
K DLLEYQRSLALSKMVSS GMGA
Sbjct: 344 KPTPPGTTSAPLPPPAAPSVTAADLLEYQRSLALSKMVSSQALMQAQAQQHLKQAMGMGA 403
Query: 404 GVSQAMYDASFPNVGPSQQQLMYY 427
GVSQAMYDASFPNVGPSQQQLMYY
Sbjct: 404 GVSQAMYDASFPNVGPSQQQLMYY 427
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/398 (59%), Positives = 278/398 (69%), Gaps = 21/398 (5%)
Query: 46 QIEPILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSSYG 105
Q+EPI GNLPPGFD STCRSVYVGNVH VTE+LL EVFQS+GLVE CKLIRKEKSS+G
Sbjct: 54 QMEPISNGNLPPGFDPSTCRSVYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKSSFG 113
Query: 106 FVDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTDSA 165
FVDYYDRRSAAL+I+TL+G+ I GQ I+VNWAYAS QREDT+ HF+IFVGDLS EV D+
Sbjct: 114 FVDYYDRRSAALAIMTLHGRHICGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDAT 173
Query: 166 LFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNW 225
L+A FS Y SCSDARVMWD KTGRSRGYGFVSFRNQQ+A++AI ++ G+WLGSRQIRCNW
Sbjct: 174 LYACFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNW 233
Query: 226 ATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDA-----PENNPQYRTVYVGNLAHE 280
ATK + E+Q +D+ N LTN + + +A++D PENNP TVYVGNL HE
Sbjct: 234 ATKNNAE-EKQETDNHNAVVLTNGSSSNPGMEASQDTGSKENPENNPDCTTVYVGNLGHE 292
Query: 281 VTQDVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCS 340
V +D LHR F+ LG GAIEEVR+Q KGFGFVRYSNH EAALAIQM NG ++ GKPIKCS
Sbjct: 293 VNRDELHRHFYNLGVGAIEEVRVQQDKGFGFVRYSNHGEAALAIQMANGLVVRGKPIKCS 352
Query: 341 WGNKXXXXXXXXXXXXXXXXXXX-----------XXXDLLEYQRSLALSKMVSSXXXXXX 389
WGNK D++ YQR L LS++ +
Sbjct: 353 WGNKPTPPGTSSKPLPPPLPSYQPVPMAGVPQGFSAADIVAYQRQLTLSQVAAG--QIAG 410
Query: 390 XXXXXXXXXXGMGAGVSQAMYDASFPNVGPSQQQLMYY 427
G+ A SQA+YD +PN S QQLMYY
Sbjct: 411 QHGLAGQVSAGLLAAGSQALYDG-YPNQS-SAQQLMYY 446
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 152/286 (53%), Gaps = 27/286 (9%)
Query: 64 CRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSI 119
+++++G++ + E+ + F +TG V+ KLIR ++S YGFV++ R +A +
Sbjct: 89 VKTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRIL 148
Query: 120 LTLNGKQI--FGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTDSALFAFFS-GYSSC 176
T NG+ + + R+NWA A +R+DT D + IFVGDL+ +VTD L F Y S
Sbjct: 149 QTYNGQMMPNVEMVFRLNWASAGEKRDDTPD-YTIFVGDLAADVTDYLLQETFRVHYPSV 207
Query: 177 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQ 236
A+V+ D+ T RS+GYGFV F + + A+ ++NG SR +R A + G Q+
Sbjct: 208 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQE 267
Query: 237 TSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGAG 296
+ A EN+P T++VG L VT+DVL ++F G
Sbjct: 268 RVPNAQGAQS-----------------ENDPNNTTIFVGGLDPNVTEDVLKQVFAPY--G 308
Query: 297 AIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWG 342
+ V+I +GK GFV+Y N A A+ + G ++GG+ ++ SWG
Sbjct: 309 EVVHVKIPVGKRCGFVQYVNRPSAEQALAVLQGTLIGGQNVRLSWG 354
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 153/289 (52%), Gaps = 16/289 (5%)
Query: 64 CRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSI 119
R++++G++ E L F TG ++ K+IR + +S YGF+++ A +
Sbjct: 15 VRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVL 74
Query: 120 LTLNGKQIFG--QLIRVNWA-YASGQRE-DTTDHFNIFVGDLSPEVTDSALFAFFS-GYS 174
T NG Q+ G R+NWA ++SG+R D +IFVGDL+P+VTD L F Y
Sbjct: 75 QTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVSYP 134
Query: 175 SCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGE 234
S A+V+ D TGRS+GYGFV F ++ + A+ ++NG + +R +R + A + G
Sbjct: 135 SVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGS 194
Query: 235 Q-QTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHAL 293
Q Q +K + + P+++P T+++GNL VT+D L ++ +
Sbjct: 195 QLQYGAAKAMYPAAGYAV----PQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQI--CV 248
Query: 294 GAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWG 342
G + V+I K GFV+Y++ A A A+Q +G +G + ++ SWG
Sbjct: 249 QFGELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSWG 297
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 151/288 (52%), Gaps = 24/288 (8%)
Query: 64 CRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSI 119
R++++G++ + E L F G + K+IR +++ YGF+++ A +
Sbjct: 66 VRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVL 125
Query: 120 LTLNGKQIFG--QLIRVNWAY--ASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSG-YS 174
NG+ + Q+ ++NWA A +R D + IFVGDL+ +VTD L F Y
Sbjct: 126 QGYNGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQ 185
Query: 175 SCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGE 234
S A+V++D+ TGRS+GYGFV F + + A+ ++NGQ+ SR +R A+ + G
Sbjct: 186 SVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGG 245
Query: 235 QQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALG 294
QQ + T + + D+ NN TV+VG L VT +VL + F
Sbjct: 246 QQQPSA----------TYQNTQGTDSDSDPNN---TTVFVGGLDPSVTDEVLKQAFSPY- 291
Query: 295 AGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWG 342
G + V+I +GK GFV+YSN A A AI+M NG LGG+ I+ SWG
Sbjct: 292 -GELVYVKIPVGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWG 338
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 60 DTSTCRSVYVGNVHVQVTEALLREVFQST-GLVEGCKLIRKEKSS----YGFVDYYDRRS 114
D + +++VG++ VT+ +L++ F++ V+G K++ + YGFV + D
Sbjct: 155 DDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDE 214
Query: 115 AALSILTLNGKQIFGQLIRV----NWAYASGQREDTTDHFN--------------IFVGD 156
++ +NG+ + +R+ N GQ++ + + N +FVG
Sbjct: 215 QTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTVFVGG 274
Query: 157 LSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWL 216
L P VTD L FS Y ++ ++ G FV + N+ A+ AI LNG L
Sbjct: 275 LDPSVTDEVLKQAFSPYGELVYVKIPVGKRCG------FVQYSNRASAEEAIRMLNGSQL 328
Query: 217 GSRQIRCNWATKGASNGEQQTSDSKN 242
G + IR +W G S G +Q +N
Sbjct: 329 GGQSIRLSW---GRSPGNKQPQQDQN 351
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 152/308 (49%), Gaps = 37/308 (12%)
Query: 47 IEPILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS--- 103
+ P L +P G ++++VG++H + E L F TG V K+IR +++
Sbjct: 98 VRPALRA-VPRGGGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSE 156
Query: 104 -YGFVDYYDRRSAALSILTLNGKQIF---GQLIRVNWAYAS--GQREDTTDHFNIFVGDL 157
YGFV++Y +AA +L I Q R+NWA S +R D +IFVGDL
Sbjct: 157 GYGFVEFYSH-AAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDL 215
Query: 158 SPEVTDSALFAFFSG-YSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWL 216
+ +V D+ L FS YSS A+V+ D TGRS+GYGFV F + + A+ ++NG +
Sbjct: 216 ASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYC 275
Query: 217 GSRQIRCNWATKGASNGEQQTSDS--KNVADLTNNLTEDGKEKANEDAPENNPQYRTVYV 274
+R +R AT ++G + S ++ DLTN TV+V
Sbjct: 276 STRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNT---------------------TVFV 314
Query: 275 GNLAHEVTQDVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGG 334
G L V++D L + F G I V+I +GK GFV++ A A+Q NG +G
Sbjct: 315 GGLDPNVSEDDLRQTFSQY--GEISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGK 372
Query: 335 KPIKCSWG 342
+ ++ SWG
Sbjct: 373 QTVRLSWG 380
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 154/304 (50%), Gaps = 36/304 (11%)
Query: 52 TGNLPPGFDTSTC---RSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----Y 104
T P G + C ++++VG++ + E L F +G V K+IR ++ Y
Sbjct: 49 TPPAPAGSGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGY 108
Query: 105 GFVDYYDRRSAALSILTLNGKQI--FGQLIRVNWA-YASGQ-REDTTDHFNIFVGDLSPE 160
GFV++Y SA ++ G + + ++NWA Y+ G+ R + ++IFVGDL+ +
Sbjct: 109 GFVEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYSIFVGDLAAD 168
Query: 161 VTDSALFAFFSG-YSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSR 219
VTD L F+ Y S A+V+ D TGRSRGYGFV F + D A+ ++NG + +R
Sbjct: 169 VTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTR 228
Query: 220 QIRCNWATKGASNGEQQT-SDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLA 278
IR AT S+G+ + + + D TN RTVYVG L
Sbjct: 229 PIRIGPATPRRSSGDSGSSTPGHSDGDSTN---------------------RTVYVGGLD 267
Query: 279 HEVTQDVLHRLFHALGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIK 338
V++D L + F G + V+I LGK GFV++ + +A A+Q NG ++G + ++
Sbjct: 268 PNVSEDELRKAFAKYGD--VASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVR 325
Query: 339 CSWG 342
SWG
Sbjct: 326 LSWG 329
>Os02g0567900 Similar to RNA Binding Protein 47
Length = 257
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 41/224 (18%)
Query: 130 QLIRVNWA-YASGQR--EDTTDHFNIFVGDLSPEVTDSALFAFFSG-YSSCSDARVMWDQ 185
+ ++NWA Y+ G++ E +DH +IFVGDL+ +VTD L F+ Y S A+V+ D
Sbjct: 6 RAFKLNWASYSMGEKRAELASDH-SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDA 64
Query: 186 KTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNG-------EQQTS 238
TGRSRGYGFV F + D A+ ++NG + +R IR AT S+G Q S
Sbjct: 65 NTGRSRGYGFVRFGDDNDKTHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDS 124
Query: 239 DSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGAGAI 298
DS N RT+YVG L T+D L + F G +
Sbjct: 125 DSTN---------------------------RTIYVGGLDPNATEDELRKAFAKYGD--L 155
Query: 299 EEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWG 342
V+I +GK GFV++ N +A A+Q NG +G + ++ SWG
Sbjct: 156 ASVKIPVGKQCGFVQFVNRPDAEEALQGLNGSTIGKQAVRLSWG 199
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 66 SVYVGNVHVQVTEALLREVF-QSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSIL 120
S++VG++ V VT+ +L ++F + V+G K+I + YGFV + D ++
Sbjct: 29 SIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMT 88
Query: 121 TLNGKQIFGQLIRVNWA---------YASGQREDTTDHFN--IFVGDLSPEVTDSALFAF 169
+NG + IR+ A +S R+ +D N I+VG L P T+ L
Sbjct: 89 EMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKA 148
Query: 170 FSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKG 229
F+ Y + ++ ++ G FV F N+ DA+ A+ LNG +G + +R +W
Sbjct: 149 FAKYGDLASVKIPVGKQCG------FVQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSP 202
Query: 230 ASNGEQQTSDS 240
AS +Q DS
Sbjct: 203 AS--KQSRGDS 211
>AK108879
Length = 670
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 32/301 (10%)
Query: 57 PGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS---YGFVDYYDRR 113
P S ++++ N+ + L + F + G + CK++ ++ + +GFV Y R
Sbjct: 124 PALRRSGVGNIFIKNLDKTIDNKALHDTFSAFGNILSCKVVTDDQGASRGFGFVHYETRE 183
Query: 114 SAALSILTLNGKQIFGQLIRVNWAYASGQR----EDTTDHF-NIFVGDLSPEVTDSALFA 168
+A L+I +NG + G + V + +R E+ F N+F+ +L VTD L A
Sbjct: 184 AADLAIDKVNGMLLNGIKVFVGHHISRKERISHLEELKAQFTNVFIKNLDEAVTDEELQA 243
Query: 169 FFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATK 228
F + A + D+ +G+SRG+GF++F +DAQ A+ LN + ++I A K
Sbjct: 244 LFEPFGEIQSAILQRDE-SGKSRGFGFINFVEHEDAQKAVEALNDVEVNGKRIFVGRAQK 302
Query: 229 GASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHR 288
S+ +L E+ ++ N +YV NL VT+D L
Sbjct: 303 ----------KSERTEELRRQFEALKLERMSKFHGVN------LYVKNLDEMVTEDQLRM 346
Query: 289 LFHALGAGAIEEVRIQL-----GKGFGFVRYSNHAEAALAIQMGNGRILGGKPIKCSWGN 343
F G+ I +R+ + +GFGFV +S EAA AI NGR++ GKP+ +
Sbjct: 347 EFTPFGS--ISSLRVMVDEKGVSRGFGFVCFSAPEEAARAISEMNGRMVNGKPLYVALAQ 404
Query: 344 K 344
+
Sbjct: 405 R 405
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 43/282 (15%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIR----KEKSSYGFVDYYDRRSAALSILTL 122
+YVG +H VTEA+L E+F G V ++ R + Y +V+++ +I +L
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 123 NGKQIFGQLIRVNWAYASGQREDTTDHF---NIFVGDLSPEVTDSALFAFFSGYSSCSDA 179
N I GQ R+ W+ QR+ NIF+ +L + + AL FS + +
Sbjct: 106 NYALIKGQPCRLMWS----QRDPALRRSGVGNIFIKNLDKTIDNKALHDTFSAFGNILSC 161
Query: 180 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSD 239
+V+ D + G SRG+GFV + ++ A AI+ +NG L ++ S
Sbjct: 162 KVVTDDQ-GASRGFGFVHYETREAADLAIDKVNGMLLNGIKVFVG----------HHISR 210
Query: 240 SKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGA--GA 297
+ ++ L E Q+ V++ NL VT + L LF G A
Sbjct: 211 KERISHLE----------------ELKAQFTNVFIKNLDEAVTDEELQALFEPFGEIQSA 254
Query: 298 IEEVRIQLGK--GFGFVRYSNHAEAALAIQMGNGRILGGKPI 337
I + R + GK GFGF+ + H +A A++ N + GK I
Sbjct: 255 ILQ-RDESGKSRGFGFINFVEHEDAQKAVEALNDVEVNGKRI 295
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 25/296 (8%)
Query: 50 ILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS---YGF 106
++ N P S +V+V N++ V L+E+F G + CK+ + E + YGF
Sbjct: 111 VMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGF 170
Query: 107 VDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTD--HFNIFVGDLSPEVTDS 164
V + + SA SI LN G+ + V +R D + N+++ +L ++T+
Sbjct: 171 VQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEE 230
Query: 165 ALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCN 224
+ FS Y ++M + G S+G+GFVSF+N + A+ A +NG LGS+ +
Sbjct: 231 LIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVA 289
Query: 225 WATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQD 284
A K A + L +EK NE ++N VY+ N+ EV D
Sbjct: 290 RAQKKAERKQY--------------LQRLHEEKRNEIITKSNGS--NVYIKNINDEVGDD 333
Query: 285 VLHRLFHALG---AGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGNGRILGGKPI 337
L F+ G + I + KGFGFV Y+ EA A+ G + GKP+
Sbjct: 334 ALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPL 389
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 51/307 (16%)
Query: 49 PILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----Y 104
P + G L +T ++YVG++H V E L EVF G + ++ R +S Y
Sbjct: 27 PAVAGGL-----NATVPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRY 81
Query: 105 GFVDYYDRRSAALSILTLNGKQIFGQLIRVNWAY--ASGQREDTTDHFNIFVGDLSPEVT 162
G+V+Y + AA+++ LN I + IRV W+ +R + F + DL V+
Sbjct: 82 GYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVS 141
Query: 163 DSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIR 222
LF F SC A+ + G SRGYGFV F Q+ A ++I +LN RQ+
Sbjct: 142 LQELFCKFGDILSCKVAK----NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQL- 196
Query: 223 CNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVT 282
+VA K +E + N+ +Y +Y+ NL ++T
Sbjct: 197 -------------------HVATFI---------KKSERSTNNDDKYTNLYMKNLDDDIT 228
Query: 283 QDVLHRLFHALGAGAIEEVRIQ-----LGKGFGFVRYSNHAEAALAIQMGNGRILGGKPI 337
++++ F G + V+I KGFGFV + N A A + NG +LG K +
Sbjct: 229 EELIKLKFSQY--GLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTL 286
Query: 338 KCSWGNK 344
+ K
Sbjct: 287 YVARAQK 293
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 66 SVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILT 121
+ YVGN+ QV+E LL E+F G V + + ++ YGFV++ A +I
Sbjct: 26 TTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKI 85
Query: 122 LNGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSS-CSDAR 180
LN +++G+ IRVN A + D N+F+G+L P+V + L+ FS + ++ +
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 181 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSDS 240
+M D +TG SRG+GFVS+ + + + AI +N Q L +R I ++A K + GE+ + +
Sbjct: 144 IMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGTPA 203
Query: 241 KNVADLTN 248
+ + N
Sbjct: 204 ERLLAANN 211
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 38/197 (19%)
Query: 153 FVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 212
+VG+L P+V++ L+ F + V D+ T +GYGFV FR+++DA AI LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILN 87
Query: 213 GQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTV 272
L + IR N A S K D+ NL
Sbjct: 88 MIKLYGKPIRVNKA-----------SQDKKSLDVGANL---------------------- 114
Query: 273 YVGNLAHEVTQDVLHRLFHALG-----AGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMG 327
++GNL +V + +L+ F A G + + +GFGFV Y + + AI+
Sbjct: 115 FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAM 174
Query: 328 NGRILGGKPIKCSWGNK 344
N + L +PI S+ K
Sbjct: 175 NNQHLCNRPITVSYAYK 191
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 30/306 (9%)
Query: 50 ILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKE---KSSYGF 106
++ N P S ++++ N+ + L + F + G + CK+ E +GF
Sbjct: 112 VMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGF 171
Query: 107 VDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHF---NIFVGDLSPEVTD 163
V Y +A +I +LNG I + + V +RE++ D N+FV +LS T
Sbjct: 172 VQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTK 231
Query: 164 SALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRC 223
L F Y + + A +M G+SR +GF++F++ DA A+ +LNG+ + ++
Sbjct: 232 EDLVKIFGAYGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVEELNGKKINDKE--- 287
Query: 224 NWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQ 283
W G Q + + +L + K+ A++ Q +Y+ NL +
Sbjct: 288 -WYV-----GRAQKKSEREI-ELKRRFEQSMKDAADKY------QGLNLYMKNLDDSIGD 334
Query: 284 DVLHRLFHALGAGAIEEVRIQ-----LGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIK 338
D L LF G I +I + KG GFV +S EA+ A+ NG+++ GKP+
Sbjct: 335 DQLCELFS--NYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 392
Query: 339 CSWGNK 344
++ +
Sbjct: 393 VAFAQR 398
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 45/282 (15%)
Query: 65 RSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKS----SYGFVDYYDRRSAALSIL 120
+S+YVG++ VT++ L E+F G V ++ R S Y +V++ + AA ++
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 121 TLNGKQIFGQLIRVNWAY--ASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSD 178
LN + G+ IRV ++ S +R + NIF+ +L + L FS + +
Sbjct: 99 LLNFAPLNGKPIRVMYSNRDPSSRRSGSA---NIFIKNLDKAIDHKTLHDTFSAFGNILS 155
Query: 179 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTS 238
+V D+ G+S+G+GFV + + AQSAI LNG + + + +
Sbjct: 156 CKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLR--------KQ 206
Query: 239 DSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGAGAI 298
+ +N D T ++ V+V NL+ T++ L ++F A G I
Sbjct: 207 ERENSVDKT--------------------KFNNVFVKNLSESTTKEDLVKIFGAY--GNI 244
Query: 299 EEVRIQLG-----KGFGFVRYSNHAEAALAIQMGNGRILGGK 335
I +G + FGF+ + + +AA A++ NG+ + K
Sbjct: 245 TSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDK 286
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
VYVGN+ + L ++F+ G+VE ++I ++ +GFV A ++
Sbjct: 145 VYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMF 204
Query: 123 NGKQIFGQLIRVNWAYASGQREDTTDH-----FNIFVGDLSPEVTDSALFAFFSGYSSCS 177
+ + G+L+ VN A G R + F I+VG+L +V DS L FS +
Sbjct: 205 HRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVV 264
Query: 178 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATK 228
DARV++D++TGRSRG+GFV+ Q++ AI L+GQ L R +R N A +
Sbjct: 265 DARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEE 315
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 45/286 (15%)
Query: 61 TSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKS----SYGFVDYYDRRSAA 116
T S+YVG++ V V +A L +VF G V ++ R + Y +V++ AA
Sbjct: 35 TFQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAA 94
Query: 117 LSILTLNGKQIFGQLIRVNWAYASGQREDTTDH---FNIFVGDLSPEVTDSALFAFFSGY 173
++ LN I G+ IR+ ++ R+ ++ NIF+ +L + + AL+ FS +
Sbjct: 95 RALEMLNFTPINGKPIRIMYS----NRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVF 150
Query: 174 SSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNG 233
+ +V + +G S+GYGFV F ++ AQ+AI+ LNG L +++ +
Sbjct: 151 GNILSCKVATEM-SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVR----- 204
Query: 234 EQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHAL 293
+ +NV+ NP++ VYV NL+ T+D L +F
Sbjct: 205 ---KQERENVS--------------------GNPKFNNVYVKNLSESTTEDNLKEIFGKF 241
Query: 294 GAGAIEEVRIQLGKG----FGFVRYSNHAEAALAIQMGNGRILGGK 335
G V ++ G G FGFV + N +AA A++ NG+ K
Sbjct: 242 GP-ITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDK 286
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 133/306 (43%), Gaps = 29/306 (9%)
Query: 50 ILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKL---IRKEKSSYGF 106
I+ N P S ++++ N+ + L + F G + CK+ + E YGF
Sbjct: 112 IMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGF 171
Query: 107 VDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHF---NIFVGDLSPEVTD 163
V + +A +I LNG + + + V +RE+ + + N++V +LS T+
Sbjct: 172 VQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTE 231
Query: 164 SALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQ-IR 222
L F + + VM + G+SR +GFV+F N DA A+ DLNG+ ++
Sbjct: 232 DNLKEIFGKFGPITSVVVMR-EGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYV 290
Query: 223 CNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVT 282
C K E + KN+ KE A+++ Q +Y+ NL +
Sbjct: 291 CRAQKKSEREMELKEKFEKNI-----------KEAADKN------QGTNLYLKNLDDSID 333
Query: 283 QD-VLHRLFHALGAGAIEEVRIQL---GKGFGFVRYSNHAEAALAIQMGNGRILGGKPIK 338
D L +F G +V L KG GFV + + +A+ A+ NG+++G KP+
Sbjct: 334 DDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLY 393
Query: 339 CSWGNK 344
+ +
Sbjct: 394 VALAQR 399
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
VYVGN+ V L ++F+ G+VE ++I ++ +GFV A +I L
Sbjct: 18 VYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEML 77
Query: 123 NGKQIFGQLIRVNWAYASGQREDTTDH-----FNIFVGDLSPEVTDSALFAFFSGYSSCS 177
N I G+L+ VN A G R + F +VG+L +V DS L FS +
Sbjct: 78 NRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVV 137
Query: 178 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNG 233
+A V++D+++GRSRG+GFVS ++++ AI+ L+GQ L R +R N A + G
Sbjct: 138 NASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAERPQRG 193
>Os07g0158300 Similar to RNA binding protein
Length = 364
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
++VGN+ +T + + F G V+ ++I + + + FV AA +I
Sbjct: 136 LFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMF 195
Query: 123 NGKQIFGQLIRVNWA-----------YASGQREDTTDH--FNIFVGDLSPEVTDSALFAF 169
NG + G+ RVN+ A+ RE+ D F I+ G+L V AL A
Sbjct: 196 NGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRAA 255
Query: 170 FSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKG 229
F G DARV++++ +GRSRG+GFVSFR +DAQ+A+ L+G L R +R + A +
Sbjct: 256 FEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAEQN 315
Query: 230 ASNG--------EQQTSDSKNVADLTNNLTEDGKEKANEDA 262
+ G E++T+ + A+ ++T + E E++
Sbjct: 316 PTAGSPSTVQSQEEETASESSDAETEQSITSEPSEAETEES 356
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 152 IFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDL 211
+FVG+L +T + FS + ++++D+ T RSRG+ FV+ ++A +AI
Sbjct: 136 LFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMF 195
Query: 212 NGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRT 271
NG LG R R N+ + GE+ + A N +DG K
Sbjct: 196 NGALLGGRTARVNY-PEVPRGGERAVG---SAAATRENRRDDGTFK-------------- 237
Query: 272 VYVGNLAHEVTQDVLHRLFHA----LGAGAIEEVRIQLGKGFGFVRYSNHAEAALAIQMG 327
+Y GNL V D L F L A I E +GFGFV + +A A++
Sbjct: 238 IYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEAL 297
Query: 328 NGRILGGKPIKCSWGNK 344
+G L G+P++ S +
Sbjct: 298 DGVELEGRPLRLSMAEQ 314
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 128/290 (44%), Gaps = 31/290 (10%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRK----EKSSYGFVDYYDRRSAALSILTL 122
+YVGN+ V L E+F G + +++ YGFV Y D R A+ +I +
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 123 NGKQIFGQLIRVNWA------YASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSC 176
NG+ + G ++V S Q TD ++V +LS + L F +
Sbjct: 355 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEV 414
Query: 177 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA---TKGASNG 233
++A+V D TG S+GYGFV + + A A+ LNG+ + R+I + + ++
Sbjct: 415 TNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSA 474
Query: 234 EQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHAL 293
+ S ++N A + + T KE +YV N+ + L LF L
Sbjct: 475 VESPSTTRNSAVESPSTTRTVKEI----------DMSNLYVCNMPSSIDTKKLVELF--L 522
Query: 294 GAGAIEEVRIQL------GKGFGFVRYSNHAEAALAIQMGNGRILGGKPI 337
G I R+ KG+GF+++++ A AI NG ++GG+ I
Sbjct: 523 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMI 572
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 31/203 (15%)
Query: 141 GQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRN 200
G + D+ N++VG+L V L F + +RV+ D TG S+GYGFV + +
Sbjct: 284 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 343
Query: 201 QQDAQSAINDLNGQWLGSRQIRCNWATKGAS-NGEQQTSDSKNVADLTNNLTEDGKEKAN 259
+ A AI +NG+ + ++ +S + QQ S ++A L
Sbjct: 344 PRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKL------------- 390
Query: 260 EDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALG----AGAIEEVRIQLGKGFGFVRYS 315
YV NL+ + D L LF G A ++ L KG+GFV+YS
Sbjct: 391 -------------YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYS 437
Query: 316 NHAEAALAIQMGNGRILGGKPIK 338
+ AA A+ NGR++ G+ I+
Sbjct: 438 SPHHAAEAVIHLNGRLVDGRKIE 460
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 43/280 (15%)
Query: 66 SVYVGNVHVQVTEALLREVFQSTGLVEGCKLIR----KEKSSYGFVDYYDRRSAALSILT 121
S+YVG++ V V +A L +VF G V ++ R + Y +V+Y AA ++
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEM 100
Query: 122 LNGKQIFGQLIRVNWAY--ASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDA 179
LN I G+ IR+ ++ S ++ T NIF+ +L + + AL+ F + +
Sbjct: 101 LNFTPINGKPIRIMYSNRDPSLRKSGTA---NIFIKNLDKSIDNKALYDTFCVFGNILSC 157
Query: 180 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSD 239
+V D +G S+GYGFV + + AQ+AI+ LNG + +++ +
Sbjct: 158 KVATD-ASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIR----------- 205
Query: 240 SKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALGAGAIE 299
K D ++ VYV NL+ T+D L +F G
Sbjct: 206 -----------------KQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGT-ITS 247
Query: 300 EVRIQLGKG----FGFVRYSNHAEAALAIQMGNGRILGGK 335
V ++ G G FGFV + + +AA A+Q NG+ K
Sbjct: 248 AVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDK 287
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 133/306 (43%), Gaps = 30/306 (9%)
Query: 50 ILTGNLPPGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRK---EKSSYGF 106
I+ N P S ++++ N+ + L + F G + CK+ E YGF
Sbjct: 113 IMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGF 172
Query: 107 VDYYDRRSAALSILTLNGKQIFGQLIRVNWAYASGQREDTTDHF---NIFVGDLSPEVTD 163
V Y +A +I LNG + + + V +R+++ N++V +LS T+
Sbjct: 173 VQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTE 232
Query: 164 SALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRC 223
L F + + + A VM + GRS+ +GFV+F + DA A+ +LNG+ ++
Sbjct: 233 DDLKEIFGKFGTITSAVVMR-EGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYV 291
Query: 224 NWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQ 283
A K S+ +L ++ +E A++ Q +Y+ NL V
Sbjct: 292 GRAQK----------KSEREMELKEKFEKNLQEAADKY------QNTNLYLKNLDDSVDD 335
Query: 284 DVLHRLFHALGAGAIEEVRIQ-----LGKGFGFVRYSNHAEAALAIQMGNGRILGGKPIK 338
D L LF G I ++ + +G GFV + + +A+ A+ N +++G KP+
Sbjct: 336 DKLRELFAEYGT--ITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 393
Query: 339 CSWGNK 344
+ +
Sbjct: 394 VALAQR 399
>AK119744
Length = 746
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 119/273 (43%), Gaps = 41/273 (15%)
Query: 66 SVYVGNVHVQVTEALLREVFQSTGLVEGCKLIR----KEKSSYGFVDYYDRRSAALSILT 121
S+YVG + VTEA+L E+F S G V ++ R + Y +V+Y ++
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 122 LNGKQIFGQLIRVNWAYASGQREDT---TDHFNIFVGDLSPEVTDSALFAFFSGYSSCSD 178
LN I G+ R+ W+ QR+ T N+F+ +L + + AL F+ + +
Sbjct: 109 LNYTVIKGKPCRIMWS----QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 179 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTS 238
+V D+ G S+GYGFV + + A +AI +NG L +++ + E+ +
Sbjct: 165 CKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV---FVGHHIPKKERMSK 220
Query: 239 DSKNVADLTNNLTEDGKEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLFHALG---A 295
+ A+ TN +YV N+ +VT D LF G +
Sbjct: 221 FEEVKANFTN-----------------------IYVKNIDLDVTDDEFRELFEKHGDITS 257
Query: 296 GAIEEVRIQLGKGFGFVRYSNHAEAALAIQMGN 328
+I +GFGFV Y H A+ A++ N
Sbjct: 258 ASIARDEQGKSRGFGFVNYIKHEAASAAVEALN 290
>Os09g0279500 Similar to Plastid-specific 30S ribosomal protein 2, chloroplast
precursor (PSRP- 2)
Length = 245
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
Query: 152 IFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDL 211
++VG++ VT+ L A F+ + + A VM+D+ TGRSR +GFV+ ++A +AI L
Sbjct: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
Query: 212 NGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNP---- 267
N +G R+I+ N+TE + APE P
Sbjct: 132 NETEVGGRKIKV-------------------------NVTESFLPNIDRSAPEPEPVFVD 166
Query: 268 -QYRTVYVGNLAHEVTQDVLHRLFHALGAGAIEEV-RIQ---LGKGFGFVRYSNHAEAAL 322
QY+ VYVGNLA VT ++L F G V RI KG+GFV +S+ E
Sbjct: 167 SQYK-VYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQA 225
Query: 323 AIQMGNGRILGGKPIKC 339
A+ N L G+PI+
Sbjct: 226 AVSTFNNAELEGQPIRV 242
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 64 CRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKS----SYGFVDYYDRRSAALSI 119
R +YVGN+ VT L +F G VE +++ + + +GFV A +I
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
Query: 120 LTLNGKQIFGQLIRVNWAYASGQREDTT----------DHFNIFVGDLSPEVTDSALFAF 169
+LN ++ G+ I+VN + D + + ++VG+L+ VT L F
Sbjct: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNF 188
Query: 170 FSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
FS A V T +S+GYGFV+F ++++ Q+A++ N L + IR N A
Sbjct: 189 FSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
V+VGN+ V A L +F+ G VE ++I + + +GFV ++
Sbjct: 88 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF 147
Query: 123 NGKQIFGQLIRVNWAYA-----SGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCS 177
NG + G+ +RVN S QR + ++VG+LS V ++AL FSG
Sbjct: 148 NGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVL 207
Query: 178 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
+A+V++D+++GRSRG+GFV++ + ++ ++A+++L+G + RQIR A
Sbjct: 208 EAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVA 256
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 34/200 (17%)
Query: 147 TDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQS 206
+D +FVG+L V + L F S V++D+ TGRSRG+GFV+ + ++ ++
Sbjct: 83 SDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEA 142
Query: 207 AINDLNGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENN 266
A+ NG L R +R N +E++++ AP
Sbjct: 143 AVEQFNGYILDGRSLRVNSGPPPP------------------------REQSSQRAPRG- 177
Query: 267 PQYRTVYVGNLAHEVTQDVLHRLFHALGAGAIEEVRIQL------GKGFGFVRYSNHAEA 320
+ VYVGNL+ V L LF G G + E ++ +GFGFV Y + E
Sbjct: 178 -EANRVYVGNLSWGVDNAALANLFS--GEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEV 234
Query: 321 ALAIQMGNGRILGGKPIKCS 340
A+ +G + G+ I+ +
Sbjct: 235 ENAVSNLDGADMDGRQIRVT 254
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
V+VGN+ V A L +F+ G VE +++ ++ +GFV A ++
Sbjct: 82 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQF 141
Query: 123 NGKQIFGQLIRVNWA-------YASGQREDTTDHFN----IFVGDLSPEVTDSALFAFFS 171
NG G+ +RVN +A +F+ ++VG+L+ V +S L FS
Sbjct: 142 NGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFS 201
Query: 172 GYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
+ DA+V++D+++GRSRG+GFV++ + ++ +AI++L+G L RQIR A
Sbjct: 202 EQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVA 256
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 24/197 (12%)
Query: 148 DHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSA 207
+ +FVG+L V + L F S V++D++TGRSRG+GFV+ ++A +A
Sbjct: 78 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 137
Query: 208 INDLNGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNP 267
+ NG R +R N +G D D ++ N
Sbjct: 138 VEQFNGYTFQGRPLRVN-------SGPPPPRD-------------DFAPRSPRGGGSNFD 177
Query: 268 QYRTVYVGNLAHEVTQDVLHRLFH----ALGAGAIEEVRIQLGKGFGFVRYSNHAEAALA 323
+YVGNLA V L LF L A I + +GFGFV Y + E A
Sbjct: 178 SSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNA 237
Query: 324 IQMGNGRILGGKPIKCS 340
I +G L G+ I+ +
Sbjct: 238 ISNLDGVDLDGRQIRVT 254
>Os02g0622500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 137
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 146 TTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQ 205
+TD F +F GDL EV D L FS Y S + ARV+ D+ TG++RGY FVSF N D
Sbjct: 25 STDDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLA 84
Query: 206 SAINDLNGQWLGSRQIRCNWAT 227
+A+ ++NG+++G+R I+ +T
Sbjct: 85 AALKEMNGKYVGNRPIKLRKST 106
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
+Y GN+ A L + Q E +++ + + FV I L
Sbjct: 147 LYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKNL 206
Query: 123 NGKQIFGQLIRVNWAYASGQR---EDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDA 179
+G G+ +RVN+A + T+H +FVG+LS VT L F + A
Sbjct: 207 DGSLYSGRTMRVNFADKPKPKLPLYPETEH-KLFVGNLSWTVTSEMLTEMFQKCGNVVGA 265
Query: 180 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
RV++D +TGRSRGYGFV + +++ A++ LNG L R+IR N A
Sbjct: 266 RVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 312
>Os08g0567200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 235
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Query: 139 ASGQR-EDTT------DHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSR 191
A+GQ ED T + + +F GDL EV D L FS + S + ARV+ D++TG+++
Sbjct: 109 AAGQSWEDPTLTDWPDNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTK 168
Query: 192 GYGFVSFRNQQDAQSAINDLNGQWLGSRQI---RCNW 225
GYGFVSF N D AI ++NG+++G+R I + NW
Sbjct: 169 GYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNW 205
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 152 IFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDL 211
+FVG LS D +L F+ + ++ARV+ D+++GRSRG+GFVSF N DA+SA++ +
Sbjct: 39 LFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAM 98
Query: 212 NGQWLGSRQIRCNWATK 228
+G+ L R IR N+A +
Sbjct: 99 DGKELEGRSIRVNFANE 115
>Os04g0591000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 291
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 65 RSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS---YGFVDYYDRRSAALSILT 121
R +YV N+ + ++F G V+ ++I+ + + FV AA ++
Sbjct: 80 RKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 122 LNGKQIFGQLIRVNWAYASGQREDTT------DHFNIFVGDLSPEVTDSALFAFFSGYSS 175
LN + G+ IRV ++ + + + ++V +L + + FFS ++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLPWKARAPNMKEFFSKFNP 199
Query: 176 CSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQ 235
S A+V++D +G+S GYGFVSF +++A++A+ +L+G+ L R +R W + +
Sbjct: 200 LS-AKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWRQSVDDSDDS 258
Query: 236 QTSDSK----NVADLTNNLTEDGKEKANEDAPE 264
+D + NV +T++G + ED E
Sbjct: 259 VKADGEIEDANVDGEAEGVTDNGTKDHGEDKQE 291
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 57 PGFDTSTCRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDR 112
PG D+S ++VG V + TE + F+ G + +++ + + +GFV + D
Sbjct: 60 PGGDSSG--KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSD- 116
Query: 113 RSAALSILTLNGKQIFGQLIRVNWAYASGQ--REDTTDHFNIFVGDLSPEVTDSALFAFF 170
+ + + + I G+ + V + +D IFVG L +T+ L F
Sbjct: 117 -PSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHF 175
Query: 171 SGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGA 230
S Y + ++M D TGRSRG+GFV+F ++ + I++ + LG +Q+ A
Sbjct: 176 SPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 235
Query: 231 SNGEQ 235
G+
Sbjct: 236 HGGDH 240
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,853,620
Number of extensions: 467859
Number of successful extensions: 1975
Number of sequences better than 1.0e-10: 30
Number of HSP's gapped: 1803
Number of HSP's successfully gapped: 44
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)