Os08g0567200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0567200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.27 | 0.217 | 11.3 | 0.306 | 0.302 | 1.01 | -0.288 | -0.656 | -0.0567 | 8.97 | -27.42 | 392 | -- | -- |
| 21.57 | 0.216 | 11.3 | 0.404 | 0.297 | 1 | -0.235 | -- | -0.0293 | 8.77 | -20.08 | 368 | -- | -- |
| 21.51 | 0.216 | 11.3 | 0.317 | 0.309 | 0.997 | -- | -0.524 | -0.0508 | 9.32 | 13.73 | 412 | -- | -- |
| 21.69 | 0.217 | 11.3 | 0.403 | 0.313 | 0.98 | -- | -- | -0.0269 | 9.36 | -22.47 | 422 | -- | -- |
| 23.17 | 0.225 | 11.3 | 0.38 | -- | 0.952 | -- | -0.413 | -0.0305 | -- | 13.73 | 412 | -- | -- |
| 32.35 | 0.267 | 11.3 | 0.618 | 0.252 | -- | 0.0305 | -- | 0.117 | 13.2 | -- | -- | -- | -- |
| 32.35 | 0.266 | 11.3 | 0.619 | 0.252 | -- | -- | -- | 0.117 | 13.1 | -- | -- | -- | -- |
| 23.21 | 0.224 | 11.3 | 0.432 | -- | 0.96 | -- | -- | -0.0174 | -- | 1.704 | 19 | -- | -- |
| 25.49 | 0.235 | 11.3 | -- | 0.365 | 1.16 | -- | -- | -0.0944 | 9.16 | -15.4 | 468 | -- | -- |
| 36.29 | 0.281 | 11.3 | 0.609 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 42.45 | 0.305 | 11.3 | -- | 0.242 | -- | -- | -- | 0.048 | 13 | -- | -- | -- | -- |
| 27.85 | 0.246 | 11.3 | -- | -- | 1.1 | -- | -- | -0.0813 | -- | 1.206 | 19 | -- | -- |
| 46.09 | 0.317 | 11.3 | -- | -- | -- | -- | -- | 0.0443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 5 | 19.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 16 | 19.70 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 37 | 19.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 94 | 20.42 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 210 | 21.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 222 | 21.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 225 | 21.10 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 238 | 21.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 278 | 21.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 289 | 21.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 364 | 21.46 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 387 | 21.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 606 | 21.94 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 664 | 22.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 688 | 22.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 711 | 22.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 743 | 22.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 804 | 22.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 813 | 22.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 857 | 22.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 902 | 22.33 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 965 | 22.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 993 | 22.42 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |