BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0567200 Os08g0567200|AK061692
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0567200 RNA-binding region RNP-1 (RNA recognition moti... 340 5e-94
Os02g0622500 RNA-binding region RNP-1 (RNA recognition moti... 179 2e-45
Os08g0520300 Similar to Oligouridylate binding protein 85 4e-17
Os04g0625800 Similar to RNA Binding Protein 45 75 5e-14
Os07g0615400 Similar to Oligouridylate binding protein 74 8e-14
Os09g0462700 Similar to RNA Binding Protein 47 70 2e-12
Os04g0449900 Similar to RNA Binding Protein 47 70 2e-12
Os03g0174100 Similar to RNA Binding Protein 45 69 2e-12
Os03g0569900 Similar to RNA Binding Protein 45 69 4e-12
Os02g0567900 Similar to RNA Binding Protein 47 66 2e-11
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 64 8e-11
>Os08g0567200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 235
Score = 340 bits (872), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 169/199 (84%), Positives = 169/199 (84%)
Query: 37 MAMASTXXXXXXXXXXXXXXXXXRDAQTITPEALESVKAALATSDVLDPANARATATSSS 96
MAMAST RDAQTITPEALESVKAALATSDVLDPANARATATSSS
Sbjct: 37 MAMASTYQYQQYQQLQQAQQLFQRDAQTITPEALESVKAALATSDVLDPANARATATSSS 96
Query: 97 DXXXXXXXXXXXXXGQSWEDPTLTDWPDNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 156
D GQSWEDPTLTDWPDNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA
Sbjct: 97 DPAAKKKAIPRRAAGQSWEDPTLTDWPDNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 156
Query: 157 RVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDALER 216
RVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDALER
Sbjct: 157 RVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDALER 216
Query: 217 QKNHIQKKPKMPKKSILHK 235
QKNHIQKKPKMPKKSILHK
Sbjct: 217 QKNHIQKKPKMPKKSILHK 235
>Os02g0622500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 137
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 96/111 (86%)
Query: 125 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 184
+D+RLFCGDLGNEVNDDVL+KAFS++PSFNMARV+RDK TGKT+GY FVSF+N +DLA A
Sbjct: 27 DDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
Query: 185 IKEMNGKYVGNRPIKLRKSNWKERTDVDALERQKNHIQKKPKMPKKSILHK 235
+KEMNGKYVGNRPIKLRKS WK R D +AL++ K QKK K KKSILHK
Sbjct: 87 LKEMNGKYVGNRPIKLRKSTWKNRIDYEALQKPKTQPQKKFKAQKKSILHK 137
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 127 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGAIK 186
+ +F GDL +EVND L FS +PS + ARV+ D +TG+++GYGFVSF N + AI
Sbjct: 158 FHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 217
Query: 187 EMNGKYVGNRPIKLRKSNWKERTDVDALERQKNH 220
EM GK++G+R I+ NW + + + + NH
Sbjct: 218 EMTGKWLGSRQIRC---NWATKNNAEEKQETDNH 248
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 126 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 184
DY +F GDL +V D +L + F +PS A+VV DK T ++KGYGFV F +PT+ A A
Sbjct: 179 DYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 238
Query: 185 IKEMNGKYVGNRPIKLRKSNWKERTDVDALERQKN 219
+ EMNG +RP+++ + K+ T V ER N
Sbjct: 239 MTEMNGMLCSSRPMRIGPAANKKTTGVQ--ERVPN 271
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 125 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 184
+ + +F GDL EV D L FS + S + ARV+ D++TG+++GYGFVSF N D A
Sbjct: 148 DHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSA 207
Query: 185 IKEMNGKYVGNRPIKLRKSNW 205
I ++NG+++G+R I + NW
Sbjct: 208 INDLNGQWLGSRQI---RCNW 225
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 125 NDYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAG 183
+D+ +F GDL ++VND L + FS R+ S A+VV D TG++KGYGFV F + +
Sbjct: 206 SDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTH 265
Query: 184 AIKEMNGKYVGNRPIKL 200
A+ EMNG Y RP+++
Sbjct: 266 AMTEMNGVYCSTRPMRI 282
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 125 NDYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAG 183
+DY +F GDL +V D++L + F+ ++ S A+V+ D TG+++GYGFV F + D +
Sbjct: 156 SDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSH 215
Query: 184 AIKEMNGKYVGNRPIKL 200
A+ EMNG Y RPI++
Sbjct: 216 AMTEMNGAYCSTRPIRI 232
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 126 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 184
D+ +F GDL +V D +L + F +PS A+VV D TG++KGYGFV F++ + A
Sbjct: 108 DHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRA 167
Query: 185 IKEMNGKYVGNRPIKL 200
+ EMNG Y RP+++
Sbjct: 168 MTEMNGMYCSTRPMRI 183
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 125 NDYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAG 183
+DY +F GDL ++V D +L F + + S A+VV D+ TG++KGYGFV F + +
Sbjct: 158 SDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTR 217
Query: 184 AIKEMNGKYVGNRPIKL 200
A+ EMNG+Y +RP+++
Sbjct: 218 AMTEMNGQYCSSRPMRI 234
>Os02g0567900 Similar to RNA Binding Protein 47
Length = 257
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 125 NDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAG 183
+D+ +F GDL +V D++L F++ + S A+V+ D TG+++GYGFV F + D
Sbjct: 26 SDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTH 85
Query: 184 AIKEMNGKYVGNRPIKL 200
A+ EMNG Y RPI++
Sbjct: 86 AMTEMNGAYCSTRPIRI 102
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 128 RLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKE 187
+LF G L NDD L +AF+ F ARV+ D+ +G+++G+GFVSF+N D A+
Sbjct: 38 KLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDA 97
Query: 188 MNGKYVGNRPIKLRKSN 204
M+GK + R I++ +N
Sbjct: 98 MDGKELEGRSIRVNFAN 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,554,141
Number of extensions: 203723
Number of successful extensions: 597
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 11
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)