Os02g0622500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0622500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.99 | 0.583 | 9.9 | 0.543 | 1.75 | 3.51 | 1.83 | 1.4 | 0.375 | 9.17 | 10.81 | 9 | -- | -- |
| 155.12 | 0.58 | 9.91 | 0.409 | 1.75 | 3.5 | 2.11 | -- | 0.351 | 9.26 | 14.4 | 5 | -- | -- |
| 164.06 | 0.597 | 9.88 | 0.754 | 1.74 | 3.55 | -- | 2.58 | 0.414 | 9 | 8.424 | 5 | -- | -- |
| 169.7 | 0.607 | 9.92 | 0.405 | 1.73 | 3.58 | -- | -- | 0.317 | 9.04 | 13.35 | 5 | -- | -- |
| 333.37 | 0.85 | 9.95 | 0.603 | -- | 4.1 | -- | 2.21 | 0.333 | -- | 8.048 | 3 | -- | -- |
| 270.84 | 0.772 | 9.81 | 1.01 | 2.18 | -- | 2.27 | -- | 0.813 | 10.9 | -- | -- | -- | -- |
| 292.57 | 0.801 | 9.81 | 1.1 | 2.18 | -- | -- | -- | 0.819 | 10.9 | -- | -- | -- | -- |
| 337.13 | 0.855 | 9.99 | 0.298 | -- | 4.16 | -- | -- | 0.248 | -- | 13.56 | 2 | -- | -- |
| 173.61 | 0.614 | 9.94 | -- | 1.73 | 3.78 | -- | -- | 0.249 | 8.9 | 13.08 | 5 | -- | -- |
| 586.04 | 1.13 | 9.86 | 1.05 | -- | -- | -- | -- | 0.805 | -- | -- | -- | -- | -- |
| 324.43 | 0.843 | 9.84 | -- | 2.17 | -- | -- | -- | 0.697 | 10.8 | -- | -- | -- | -- |
| 339.36 | 0.858 | 10 | -- | -- | 4.25 | -- | -- | 0.205 | -- | 12.65 | 2 | -- | -- |
| 615.32 | 1.16 | 9.89 | -- | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 6 | 154.17 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 17 | 155.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 22 | 156.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 157.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 27 | 157.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 30 | 157.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 32 | 158.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 33 | 158.29 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 34 | 158.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 40 | 159.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 43 | 159.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 44 | 159.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 45 | 159.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 58 | 160.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 61 | 161.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 69 | 162.00 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 84 | 163.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 95 | 163.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 98 | 164.23 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 129 | 165.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 156 | 167.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 171 | 168.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 175 | 168.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 205 | 169.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 240 | 171.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 516 | 181.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 589 | 183.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 682 | 187.57 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 21 |
| 722 | 188.53 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 23 |
| 755 | 189.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 927 | 192.71 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 930 | 192.77 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 948 | 192.96 | temperature | 25 | 30 | < th | dose independent | rect. | 11 | 23 |
| 964 | 193.15 | temperature | 25 | 30 | < th | dose independent | rect. | 21 | 23 |
| 969 | 193.24 | temperature | 25 | 30 | < th | dose independent | no | NA | NA |
| 972 | 193.30 | temperature | 25 | 30 | < th | dose independent | rect. | 9 | 23 |
| 984 | 193.44 | temperature | 25 | 30 | < th | dose independent | rect. | 19 | 23 |
| 985 | 193.46 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 23 |
| 986 | 193.46 | temperature | 25 | 30 | < th | dose independent | rect. | 17 | 23 |
| 989 | 193.52 | temperature | 25 | 30 | < th | dose independent | rect. | 15 | 23 |